Background: Adolescence is a critical period of brain maturation and heightened vulnerability to cognitive and mental health disorders. Sleep plays a vital role in neurodevelopment, yet the mechanisms linking insufficient sleep to adverse brain and behavioral outcomes remain unclear. The glymphatic system (GS), a brain-wide clearance pathway, may provide a key mechanistic link. Methods: Participants from the Adolescent Brain Cognitive Development (ABCD) Study (n =6,800; age ~ 11 years) were categorized into sleep-sufficient (>=9 h/night) and sleep-insufficient (<9 h/night) groups. Linear models tested associations among sleep, PVS burden, brain volumes, and behavioral outcomes. Mediation analyses evaluated whether PVS burden explained sleep-related effects. Results: Adolescents with insufficient sleep exhibited significantly greater PVS burden, reduced cortical, subcortical, and white matter volumes, poorer cognitive performance across multiple domains (largest effect in crystallized intelligence), and elevated psychopathology (largest effect in general problems). Sleep duration and quality were strongly associated with PVS burden. Mediation analyses revealed that PVS burden
Cognitive neuroscience explores the mechanisms of cognition by studying its structural and functional brain correlates. Here, we report the first systematic review that assesses how information from structural and functional neuroimaging methods can be integrated to investigate the brain substrates of cognition. Web of Science and Scopus databases were searched for studies of healthy young adult populations that collected cognitive data, and structural and functional neuroimaging data. Five percent of screened studies met all inclusion criteria. Next, 54% of included studies related cognitive performance to brain structure and function without quantitative analysis of the relationship. Finally, 32% of studies formally integrated structural and functional brain data. Overall, many studies consider either structural or functional neural correlates of cognition, and of those that consider both, they have rarely been integrated. We identified four emergent approaches to the characterisation of the relationship between brain structure, function and cognition; comparative, predictive, fusion and complementary. We discuss the insights provided each approach and how authors can select appr
Brain rhythms seem central to understanding the neurophysiological basis of human cognition. Yet, despite significant advances, key questions remain unresolved. In this comprehensive position paper, we review the current state of the art on oscillatory mechanisms and their cognitive relevance. The paper critically examines physiological underpinnings, from phase-related dynamics like cyclic excitability, to amplitude-based phenomena, such as gating by inhibition, and their interactions, such as phase-amplitude coupling, as well as frequency dynamics, like sampling mechanisms. We also critically evaluate future research directions, including travelling waves and brain-body interactions. We then provide an in-depth analysis of the role of brain rhythms across cognitive domains, including perception, attention, memory, and communication, emphasising ongoing debates and open questions in each area. By summarising current theories and highlighting gaps, this position paper offers a roadmap for future research, aimed at facilitating a unified framework of rhythmic brain function underlying cognition.
Cognitive function requires the coordination of neural activity across many scales, from neurons and circuits to large-scale networks. As such, it is unlikely that an explanatory framework focused upon any single scale will yield a comprehensive theory of brain activity and cognitive function. Modelling and analysis methods for neuroscience should aim to accommodate multiscale phenomena. Emerging research now suggests that multi-scale processes in the brain arise from so-called critical phenomena that occur very broadly in the natural world. Criticality arises in complex systems perched between order and disorder, and is marked by fluctuations that do not have any privileged spatial or temporal scale. We review the core nature of criticality, the evidence supporting its role in neural systems and its explanatory potential in brain health and disease.
Low-intensity transcranial focused ultrasound (tFUS) is rapidly emerging as a transformative non-invasive brain stimulation (NIBS) modality characterized by high spatial resolution and ability to target deep brain circuits. Unlike electromagnetic techniques such as transcranial magnetic stimulation and transcranial direct current stimulation, which are constrained by centimeter-scale resolution and a depth-focality tradeoff, tFUS leverages mechanical pressure waves to modulate both superficial cortical and deep subcortical structures with millimeter precision. This article discusses recent scientific observations and engineering breakthroughs in the advancement of tFUS for next-generation ultrasonic brain-computer interfaces (uBCIs) and human-machine interfaces. These advancements move beyond open-loop systems and demonstrate closed-loop architectures that incorporate real-time electrophysiological feedback to optimize cognitive variables such as attention, learning, trust, and cooperation in various applications. Other advances in the development of ultrasound sensors for sonomyography to decode muscle activation and functional ultrasound to monitor hemodynamic brain activity are
Cognition is a core part of and a common topic among philosophy of mind, psychology, neuroscience, AI, and cognitive science. Through a mechanistic lens, I propose a framework of defining, modeling, and analyzing cognition mechanisms. Firstly, appropriate terms are introduced and used in explanations related to the framework and within the definition of a mechanism. I implicitly contend that this terminology essentially characterizes a conceptual world required for discussions in this paper. Secondly, a mathematical model of a mechanism based on directed graphs is proposed. Thirdly, the definition of a base necessary for a mechanism to be classified as a cognition mechanism is proposed. I argue that the cognition base has the features of the cognition self of humans. Fourthly, three ways to mechanistically look at mechanisms is defined and specific instances of them are suggested. Fifthly, standards for visualization and presentation of mechanisms, cognition mechanisms, and the instances to mechanistically look at them are suggested and used to analyze cognition mechanisms through appropriate examples. Finally, the features of this paper are discussed and prospects of further devel
Background: People with bipolar disorder (BD) tend to show widespread cognitive impairment compared to healthy controls. Impairments in processing speed (PS), attention, and executive function (EF) may represent 'core' impairments that have a role in wider cognitive dysfunction. Cognitive impairments appear to relate to structural brain abnormalities in BD, but whether core deficits are related to particular brain regions is unclear and much of the research on brain-cognition associations is limited by univariate analysis and small samples. Methods: Euthymic BD patients (n=56) and matched healthy controls (n=26) underwent T1-weighted MRI scans and completed neuropsychological tests of PS, attention, and EF. We utilised public datasets to develop a normative model of cortical thickness (n=5,977) to generate robust estimations of cortical abnormalities in patients. Canonical correlation analysis was used to assess multivariate brain-cognition associations in BD, controlling for age, sex, and premorbid IQ. Results: BD showed impairments on tests of PS, attention, and EF, and abnormal cortical thickness in several brain regions compared to healthy controls. Impairments in tests of PS a
Diverse cognitive processes set different demands on locally segregated and globally integrated brain activity. However, it remains unclear how resting brains configure their functional organization to balance the demands on network segregation and integration to best serve cognition. Here, we use an eigenmode-based approach to identify hierarchical modules in functional brain networks, and quantify the functional balance between network segregation and integration. In a large sample of healthy young adults (n=991), we combine the whole-brain resting state functional magnetic resonance imaging (fMRI) data with a mean-filed model on the structural network derived from diffusion tensor imaging and demonstrate that resting brain networks are on average close to a balanced state. This state allows for a balanced time dwelling at segregated and integrated configurations, and highly flexible switching between them. Furthermore, we employ structural equation modelling to estimate general and domain-specific cognitive phenotypes from nine tasks, and demonstrate that network segregation, integration and their balance in resting brains predict individual differences in diverse cognitive phen
Brain decoding is a key neuroscience field that reconstructs the visual stimuli from brain activity with fMRI, which helps illuminate how the brain represents the world. fMRI-to-image reconstruction has achieved impressive progress by leveraging diffusion models. However, brain signals infused with prior knowledge and associations exhibit a significant information asymmetry when compared to raw visual features, still posing challenges for decoding fMRI representations under the supervision of images. Consequently, the reconstructed images often lack fine-grained visual fidelity, such as missing attributes and distorted spatial relationships. To tackle this challenge, we propose BrainCognizer, a novel brain decoding model inspired by human visual cognition, which explores multi-level semantics and correlations without fine-tuning of generative models. Specifically, BrainCognizer introduces two modules: the Cognitive Integration Module which incorporates prior human knowledge to extract hierarchical region semantics; and the Cognitive Correlation Module which captures contextual semantic relationships across regions. Incorporating these two modules enhances intra-region semantic cons
Nowadays, we have witnessed the great success of AI in various applications, including image classification, game playing, protein structure analysis, language translation, and content generation. Despite these powerful applications, there are still many tasks in our daily life that are rather simple to humans but pose great challenges to AI. These include image and language understanding, few-shot learning, abstract concepts, and low-energy cost computing. Thus, learning from the brain is still a promising way that can shed light on the development of next-generation AI. The brain is arguably the only known intelligent machine in the universe, which is the product of evolution for animals surviving in the natural environment. At the behavior level, psychology and cognitive sciences have demonstrated that human and animal brains can execute very intelligent high-level cognitive functions. At the structure level, cognitive and computational neurosciences have unveiled that the brain has extremely complicated but elegant network forms to support its functions. Over years, people are gathering knowledge about the structure and functions of the brain, and this process is accelerating r
Background: Brain network models offer insights into brain dynamics, but the utility of model-derived bifurcation parameters as biomarkers remains underexplored. Objective: This study evaluates bifurcation parameters from a whole-brain network model as biomarkers for distinguishing brain states associated with resting-state and task-based cognitive conditions. Methods: Synthetic BOLD signals were generated using a supercritical Hopf brain network model to train deep learning models for bifurcation parameter prediction. Inference was performed on Human Connectome Project data, including both resting-state and task-based conditions. Statistical analyses assessed the separability of brain states based on bifurcation parameter distributions. Results: Bifurcation parameter distributions differed significantly across task and resting-state conditions ($p < 0.0001$ for all but one comparison). Task-based brain states exhibited higher bifurcation values compared to rest. Conclusion: Bifurcation parameters effectively differentiate cognitive and resting states, warranting further investigation as biomarkers for brain state characterization and neurological disorder assessment.
Recent studies on audio models show brain-tuning - fine-tuning models to better predict corresponding fMRI activity - improves brain alignment and increases performance on downstream semantic and audio tasks. We extend this approach to a multimodal audio-video model to enhance social cognition, targeting the Superior Temporal Sulcus (STS), a key region for social processing, while subjects watch Friends. We find significant increases in brain alignment to the STS and an adjacent ROI, as well as improvements to a social cognition task related to the training data - sarcasm detection in sitcoms. In summary, our study extends brain-tuning to the multi-modal domain, demonstrating improvements to a downstream task after tuning to a relevant functional region.
While Large Language Models (LLMs) have achieved remarkable success across various applications, they also raise concerns regarding self-cognition. In this paper, we perform a pioneering study to explore self-cognition in LLMs. Specifically, we first construct a pool of self-cognition instruction prompts to evaluate where an LLM exhibits self-cognition and four well-designed principles to quantify LLMs' self-cognition. Our study reveals that 4 of the 48 models on Chatbot Arena--specifically Command R, Claude3-Opus, Llama-3-70b-Instruct, and Reka-core--demonstrate some level of detectable self-cognition. We observe a positive correlation between model size, training data quality, and self-cognition level. Additionally, we also explore the utility and trustworthiness of LLM in the self-cognition state, revealing that the self-cognition state enhances some specific tasks such as creative writing and exaggeration. We believe that our work can serve as an inspiration for further research to study the self-cognition in LLMs.
Understanding the human brain remains the Holy Grail in biomedical science, and arguably in all of the sciences. Our brains represent the most complex systems in the world (and some contend the universe) comprising nearly one hundred billion neurons with septillions of possible connections between them. The structure of these connections engenders an efficient hierarchical system capable of consciousness, as well as complex thoughts, feelings, and behaviors. Brain connectivity and network analyses have exploded over the last decade due to their potential in helping us understand both normal and abnormal brain function. Functional connectivity (FC) analysis examines functional associations between time series pairs in specified brain voxels or regions. Brain network analysis serves as a distinct subfield of connectivity analysis in which associations are quantified for all time series pairs to create an interconnected representation of the brain (a brain network), which allows studying its systemic properties. While connectivity analyses underlie network analyses, the subtle distinction between the two research areas has generally been overlooked in the literature, with them often b
This is a follow-up tutorial article of [17] and [16], in this paper, we will introduce several important cognitive functions of the brain. Brain cognitive functions are the mental processes that allow us to receive, select, store, transform, develop, and recover information that we've received from external stimuli. This process allows us to understand and to relate to the world more effectively. Cognitive functions are brain-based skills we need to carry out any task from the simplest to the most complex. They are related with the mechanisms of how we learn, remember, problem-solve, and pay attention, etc. To be more specific, in this paper, we will talk about the perception, attention and memory functions of the human brain. Several other brain cognitive functions, e.g., arousal, decision making, natural language, motor coordination, planning, problem solving and thinking, will be added to this paper in the later versions, respectively. Many of the materials used in this paper are from wikipedia and several other neuroscience introductory articles, which will be properly cited in this paper. This is the last of the three tutorial articles about the brain. The readers are suggest
Universal embodied intelligence demands robust generalization across heterogeneous embodiments, such as autonomous driving, robotics, and unmanned aerial vehicles (UAVs). However, existing embodied brain in training a unified model over diverse embodiments frequently triggers long-tail data, gradient interference, and catastrophic forgetting, making it notoriously difficult to balance universal generalization with domain-specific proficiency. In this report, we introduce ACE-Brain-0, a generalist foundation brain that unifies spatial reasoning, autonomous driving, and embodied manipulation within a single multimodal large language model~(MLLM). Our key insight is that spatial intelligence serves as a universal scaffold across diverse physical embodiments: although vehicles, robots, and UAVs differ drastically in morphology, they share a common need for modeling 3D mental space, making spatial cognition a natural, domain-agnostic foundation for cross-embodiment transfer. Building on this insight, we propose the Scaffold-Specialize-Reconcile~(SSR) paradigm, which first establishes a shared spatial foundation, then cultivates domain-specialized experts, and finally harmonizes them thr
Non-invasive brain imaging techniques allow understanding the behavior and macro changes in the brain to determine the progress of a disease. However, computational pathology provides a deeper understanding of brain disorders at cellular level, able to consolidate a diagnosis and make the bridge between the medical image and the omics analysis. In traditional histopathology, histology slides are visually inspected, under the microscope, by trained pathologists. This process is time-consuming and labor-intensive; therefore, the emergence of Computational Pathology has triggered great hope to ease this tedious task and make it more robust. This chapter focuses on understanding the state-of-the-art machine learning techniques used to analyze whole slide images within the context of brain disorders. We present a selective set of remarkable machine learning algorithms providing discriminative approaches and quality results on brain disorders. These methodologies are applied to different tasks, such as monitoring mechanisms contributing to disease progression and patient survival rates, analyzing morphological phenotypes for classification and quantitative assessment of disease, improvin
Various research initiatives try to utilize the operational principles of organisms and brains to develop alternative, biologically inspired computing paradigms and artificial cognitive systems. This paper reviews key features of the standard method applied to complexity in the cognitive and brain sciences, i.e. decompositional analysis or reverse engineering. The indisputable complexity of brain and mind raise the issue of whether they can be understood by applying the standard method. Actually, recent findings in the experimental and theoretical fields, question central assumptions and hypotheses made for reverse engineering. Using the modeling relation as analyzed by Robert Rosen, the scientific analysis method itself is made a subject of discussion. It is concluded that the fundamental assumption of cognitive science, i.e. complex cognitive systems can be analyzed, understood and duplicated by reverse engineering, must be abandoned. Implications for investigations of organisms and behavior as well as for engineering artificial cognitive systems are discussed.
Background: Information processing in the brain requires large amounts of metabolic energy, the spatial distribution of which is highly heterogeneous reflecting complex activity patterns in the mammalian brain. Results: Here, it is found based on empirical data that, despite this heterogeneity, the volume-specific cerebral glucose metabolic rate of many different brain structures scales with brain volume with almost the same exponent around -0.15. The exception is white matter, the metabolism of which seems to scale with a standard specific exponent -1/4. The scaling exponents for the total oxygen and glucose consumptions in the brain in relation to its volume are identical and equal to $0.86\pm 0.03$, which is significantly larger than the exponents 3/4 and 2/3 suggested for whole body basal metabolism on body mass. Conclusions: These findings show explicitly that in mammals (i) volume-specific scaling exponents of the cerebral energy expenditure in different brain parts are approximately constant (except brain stem structures), and (ii) the total cerebral metabolic exponent against brain volume is greater than the much-cited Kleiber's 3/4 exponent. The neurophysiological factors
We present a multi-scale differentiable brain modeling workflow utilizing BrainPy, a unique differentiable brain simulator that combines accurate brain simulation with powerful gradient-based optimization. We leverage this capability of BrainPy across different brain scales. At the single-neuron level, we implement differentiable neuron models and employ gradient methods to optimize their fit to electrophysiological data. On the network level, we incorporate connectomic data to construct biologically constrained network models. Finally, to replicate animal behavior, we train these models on cognitive tasks using gradient-based learning rules. Experiments demonstrate that our approach achieves superior performance and speed in fitting generalized leaky integrate-and-fire and Hodgkin-Huxley single neuron models. Additionally, training a biologically-informed network of excitatory and inhibitory spiking neurons on working memory tasks successfully replicates observed neural activity and synaptic weight distributions. Overall, our differentiable multi-scale simulation approach offers a promising tool to bridge neuroscience data across electrophysiological, anatomical, and behavioral sc