Strabismus is a common ocular disorder that requires fine-grained subtype diagnosis for individualized treatment planning. However, existing deep learning methods mainly provide diagnostic predictions without transparent reasoning, while recent large vision-language models (LVLMs), although promising for joint image understanding and report generation, remain highly prone to hallucination in this evidence-sensitive and rule-driven medical task. To address these challenges, we propose MAGIS, an evidence-based Multi-AGent reasoning for Interpretable Strabismus diagnosis framework. MAGIS transforms black-box end-to-end generation into a structured diagnostic process consisting of candidate hypothesis generation, dual-evidence constrained context, evidence-based corrective verification, and report generation. Specifically, we introduce a Dual-Evidence Constrained Context (DECC) mechanism that jointly organizes visual evidence from the photograph of the nine cardinal positions of gaze and evidence-based clinical diagnostic rules into a constrained context for reliable diagnostic reasoning. We further develop an Evidence-Based Corrective Verification (EBCV) mechanism that verifies whethe
Evidence-based medicine (EBM) is central to high-quality care, but remains difficult to implement in fast-paced primary care settings. Physicians face short consultations, increasing patient loads, and lengthy guideline documents that are impractical to consult in real time. To address this gap, we investigate the feasibility of using large language models (LLMs) as ambient assistants that surface targeted, evidence-based questions during physician-patient encounters. Our study focuses on question generation rather than question answering, with the aim of scaffolding physician reasoning and integrating guideline-based practice into brief consultations. We implemented two prompting strategies, a zero-shot baseline and a multi-stage reasoning variant, using Gemini 2.5 as the backbone model. We evaluated on a benchmark of 80 de-identified transcripts from real clinical encounters, with six experienced physicians contributing over 90 hours of structured review. Results indicate that while general-purpose LLMs are not yet fully reliable, they can produce clinically meaningful and guideline-relevant questions, suggesting significant potential to reduce cognitive burden and make EBM more
Assessing the correctness of patches generated by Automated Program Repair (APR) is a major bottleneck. Manual validation is labor-intensive and limited: exact matching overlooks valid variants, while semantic inspection is subjective and hard to reproduce. Existing Automated Patch Correctness Assessment (APCA) often relies on opaque predictive models that treat each patch as novel, repeatedly re-assessing semantically redundant patches. Our analysis of a large corpus of tool-generated patches reveals a duality: about 39% of unique correct patches are syntactic clones, suggesting opportunities for automation, yet about 65% of bugs have multiple distinct correct fixes, making single-reference assessment insufficient. We present Historian, a framework that leverages Large Language Models to perform multi-reference comparisons against a knowledge base of historically validated patches, producing traceable, evidence-based verdicts while conservatively isolating novel cases as Unknown. In leave-one-tool-out evaluation, Historian achieves 95.0% coverage with 88.4% accuracy, reducing manual validation to 5% of patches. As an evidence-based pre-filter, enhancing the accuracy of standalone
International Classification of Diseases (ICD) coding assigns diagnosis codes to clinical documents and is essential for healthcare billing and clinical analysis. Reliable coding requires that each predicted code be supported by explicit textual evidence. However, existing public datasets provide only code labels, without evidence annotations, limiting models' ability to learn evidence-grounded predictions. In this work, we argue that dense, document-level evidence annotation is not always necessary for learning evidence-based coding. Instead, models can learn code-specific evidence patterns from local spans and use these patterns to support document-level evidence-based coding. Based on this insight, we propose Span-Centric Learning (SCL), a training framework that strengthens LLMs' coding ability at the span level and transfers this capability to full clinical documents. Specifically, we use a small set of annotated documents to supervise evidence recognition, aggregation, and code assignment, while leveraging a large collection of lightweight evidence spans to reinforce span-level reasoning. Due to their compactness, span annotations are scalable and can be further augmented thr
The increasing adoption of large language models (LLMs) has raised serious concerns about their reliability and trustworthiness. As a result, a growing body of research focuses on evidence-based text generation with LLMs, aiming to link model outputs to supporting evidence to ensure traceability and verifiability. However, the field is fragmented due to inconsistent terminology, isolated evaluation practices, and a lack of unified benchmarks. To bridge this gap, we systematically analyze 134 papers, introduce a unified taxonomy of evidence-based text generation with LLMs, and investigate 300 evaluation metrics across seven key dimensions. Thereby, we focus on approaches that use citations, attribution, or quotations for evidence-based text generation. Building on this, we examine the distinctive characteristics and representative methods in the field. Finally, we highlight open challenges and outline promising directions for future work.
Embryo selection is one of multiple crucial steps in in-vitro fertilization, commonly based on morphological assessment by clinical embryologists. Although artificial intelligence methods have demonstrated their potential to support embryo selection by automated embryo ranking or grading methods, the overall impact of AI-based solutions is still limited. This is mainly due to the required adaptation of automated solutions to custom clinical data, reliance on time lapse incubators and a lack of interpretability to understand AI reasoning. The modern, informed patient is questioning expert decisions, particularly if the treatment is not successful. Thus, evidence-based decision justification in tasks like embryo selection would support transparent decision making and respectful patient communication. To support this aim, we hereby present an expert-annotated dataset consisting of embryo images and corresponding morphological description using natural language. The description contains relevant information on embryonic cell cycle, developmental stage and morphological features. This dataset enables the finetuning of modern foundational vision-language models to learn and improve over
As agentic applications increasingly route user tasks through official and third-party LLM APIs, provenance becomes an operational question: which model generated a given black-box response? We study Dynamic Black-Box LLM Provenance: identifying the source LLM from generations elicited by query-varying, non-predefined prompts rather than a fixed input set or benchmark suite. This setting is difficult because prompt semantics dominate the text, while model-specific authorship traces are weak and inconsistent at the surface level. We introduce READER (Robust Evidence-based Authorship Decoding via Extracted Representations), a lightweight provenance framework that treats a frozen proxy LLM as a reader of hidden authorship evidence. READER maps black-box outputs into proxy activation space, temporally filters token states within each response, and performs Bayesian Evidence Accumulation by summing single-response log-posterior evidence across independently sampled prompts. This avoids fragile mean-pooling of prompt-specific representations while preserving the query-wise evidence needed for calibrated confidence. On Agent500, a 50-target dataset built from agent-style prompts, READER r
Large Language Models show promise for recommendation, but they raise reliability concerns due to limited domain coverage and inherent stochasticity. Existing uncertainty quantification methods persist two fundamental challenges: (1) the global confidence score designed for question answering fails to reveal which positions are unreliable in ranking list; (2) fine-grained confidence extracted from model internals exhibits uniformly low values across all positions, making it impossible to filter unreliable predictions. To tackle the challenges, we propose an evidence-based confidence estimation for LLM-based ranking (EviRank). We extract three complementary evidences from a single forward pass and aggregate them via reliable opinion aggregation. Furthermore, we recognize that ranking positions are inherently unequal, and introduce a position-aware calibration. Lastly, the calibrated confidence guides ranking optimization. Experiments on three datasets demonstrate that our method achieves state-of-the-art performance on both recommendation and uncertainty quantification.
Trustworthiness and transparency are essential for the clinical adoption of artificial intelligence (AI) in healthcare and biomedical research. Recent deep research systems aim to accelerate evidence-grounded scientific discovery by integrating AI agents with multi-hop information retrieval, reasoning, and synthesis. However, most existing systems lack explicit and inspectable criteria for evidence appraisal, creating a risk of compounding errors and making it difficult for researchers and clinicians to assess the reliability of their outputs. In parallel, current benchmarking approaches rarely evaluate performance on complex, real-world medical questions. Here, we introduce DeepER-Med, a Deep Evidence-based Research framework for Medicine with an agentic AI system. DeepER-Med frames deep medical research as an explicit and inspectable workflow of evidence-based generation, consisting of three modules: research planning, agentic collaboration, and evidence synthesis. To support realistic evaluation, we also present DeepER-MedQA, an evidence-grounded dataset comprising 100 expert-level research questions derived from authentic medical research scenarios and curated by a multidiscipl
Evidence-based education has become a central concept in science education, with meta-analyses often regarded as the gold standard for informing practice. This emphasis raises critical questions concerning the applicability, generalizability and transferability of research findings into classroom practice. It remains unclear both what kind of evidence education should be based on and whether science education research can provide the type of evidence required to guide decisions at different levels. This paper argues that theories play a crucial role in building bridges between research and practice. Drawing on literature from science education and the philosophy of science, we contrast the explanatory scope of meta-analyses with the predictive and integrative potential of theories, understood in a structuralist sense as systems of models with defined domains of applicability. We propose that science education research requires both fundamental and applied research, each contributing to theory development at different levels, ranging from local and context-specific models to more fundamental theoretical frameworks. Importantly, we argue that theories in science education should not
We propose a Bayesian evidence-based inference framework based on relative belief ratios and apply it to discriminating between one and two incoherent optical point sources using spatial-mode demultiplexing (SPADE). Unlike the Helstrom measurement, SPADE require no collective detection and its optimal for asymptotically large samples. Our method avoids ad hoc statistical constructs and relies solely on the information contained in the data, with all assumptions entering only through the likelihood model and prior beliefs. Using experimental evidence, we demonstrate the superior resolving performance of SPADE over direct imaging from a new and extensible perspective; one that naturally generalizes to multiple sources and offers a practical robust approach to analyzing quantum-enhanced superresolution.
Nations across the world are working to govern AI. However, from a technical perspective, there is uncertainty and disagreement on the best way to do this. Meanwhile, recent debates over AI regulation have led to calls for "evidence-based AI policy" which emphasize holding regulatory action to a high evidentiary standard. Evidence is of irreplaceable value to policymaking. However, holding regulatory action to too high an evidentiary standard can lead to systematic neglect of certain risks. In historical policy debates (e.g., over tobacco ca. 1965 and fossil fuels ca. 1985) "evidence-based policy" rhetoric is also a well-precedented strategy to downplay the urgency of action, delay regulation, and protect industry interests. Here, we argue that if the goal is evidence-based AI policy, the first regulatory objective must be to actively facilitate the process of identifying, studying, and deliberating about AI risks. We discuss a set of 15 regulatory goals to facilitate this and show that Brazil, Canada, China, the EU, South Korea, the UK, and the USA all have substantial opportunities to adopt further evidence-seeking policies.
Evidence-Based Climate Policy (EBCP) is an approach to policymaking that relies on evidence to make decisions about managing climate impacts, mitigation, and adaptation. A core problem for EBCP is the lack of a clear definition of evidence, a fundamental concept to the theory. The literature often draws on evidence-based medicine (EBM), where evidence is typically empirical data from scientific research or systematic investigations and quality is arranged within an evidence hierarchy with randomized controlled trials and meta-analysis on top. However, this conception and hierarchy is insufficient for EBCP, which requires context-appropriate evidence, such as expert judgments, model-based probabilities, and scenario analysis. In EBCP what counts as evidence must be reassessed for relevance, quality and availability in the specific context. To demonstrate different types of evidence used in EBCP, this research is based on a case study on PNACC-3.
Evaluating Retrieval-Augmented Generation (RAG) in large language models (LLMs) is challenging because benchmarks can quickly become stale. Questions initially requiring retrieval may become answerable from pretraining knowledge as newer models incorporate more recent information during pretraining, making it difficult to distinguish evidence-based reasoning from recall. We introduce NeoQA (News Events for Out-of-training Question Answering), a benchmark designed to address this issue. To construct NeoQA, we generated timelines and knowledge bases of fictional news events and entities along with news articles and Q\&A pairs to prevent LLMs from leveraging pretraining knowledge, ensuring that no prior evidence exists in their training data. We propose our dataset as a new platform for evaluating evidence-based question answering, as it requires LLMs to generate responses exclusively from retrieved evidence and only when sufficient evidence is available. NeoQA enables controlled evaluation across various evidence scenarios, including cases with missing or misleading details. Our findings indicate that LLMs struggle to distinguish subtle mismatches between questions and evidence,
When successful, Open Source Software (OSS) projects create enormous value, but most never reach a sustainable state. Recent work has produced accurate models that forecast OSS sustainability, yet these models rarely tell maintainers what to do: their features are often high-level socio-technical signals that are not directly actionable. Decades of empirical software engineering research have accumulated a large but underused body of evidence on concrete practices that improve project health. We close this gap by using LLMs as evidence miners over the SE literature. We design a RAG-pipeline and a two-layer prompting strategy that extract researched actionables (ReACTs): concise, evidence-linked recommendations mapping to specific OSS practices. In the first layer, we systematically explore open LLMs and prompting techniques, selecting the best-performing combination to derive candidate ReACTs from 829 ICSE and FSE papers. In the second layer, we apply follow-up prompting to filter hallucinations, extract impact and evidence, and assess soundness and precision. Our pipeline yields 1,922 ReACTs, of which 1,312 pass strict quality criteria and are organized into practice-oriented cate
Large Language Models (LLMs) have demonstrated substantial progress in biomedical and clinical applications, motivating rigorous evaluation of their ability to answer nuanced, evidence-based questions. We curate a multi-source benchmark drawing from Cochrane systematic reviews and clinical guidelines, including structured recommendations from the American Heart Association and narrative guidance used by insurers. Using GPT-4o-mini and GPT-5, we observe consistent performance patterns across sources and clinical domains: accuracy is highest on structured guideline recommendations (90%) and lower on narrative guideline and systematic review questions (60--70%). We also find a strong correlation between accuracy and the citation count of the underlying systematic reviews, where each doubling of citations is associated with roughly a 30% increase in the odds of a correct answer. Models show moderate ability to reason about evidence quality when contextual information is supplied. When we incorporate retrieval-augmented prompting, providing the gold-source abstract raises accuracy on previously incorrect items to 0.79; providing top 3 PubMed abstracts (ranked by semantic relevance) impr
Software engineers are responsible for developing, maintaining, and innovating software. To hire software engineers, organizations employ a tech hiring pipeline. This process typically consists of a series of steps to evaluate the extent to which applicants meet job requirements and can effectively contribute to a development team -- such as resume screenings and technical interviews. However, research highlights substantial flaws with current tech hiring practices -- such as bias from stress-inducing assessments. As the landscape of software engineering (SE) is dramatically changing, assessing the technical proficiency and abilities of software engineers is an increasingly crucial task to meet technological needs and demands. In this paper, we outline challenges in current hiring practices and present future directions to promote fair and evidence-based evaluations in tech hiring pipelines. Our vision aims to enhance outcomes for candidates and assessments for employers to enhance the workforce in the tech industry.
Background: Recent innovations in generative artificial intelligence (AI) have transformed how programmers develop and maintain software. The advanced capabilities of generative AI tools in supporting development tasks have led to a rise in their adoption within software engineering (SE) workflows. However, little is known about how AI tools perceive evidence-based practices supported by empirical SE research. Aim: To this end, we explore the "beliefs" of generative AI tools increasingly used to support software development in practice. Method: We conduct a preliminary evaluation conceptually replicating prior work to investigate 17 evidence-based claims across five generative AI tools. Results: Our findings demonstrate generative AI tools have ambiguous beliefs regarding research claims and lack credible evidence to support responses. Conclusions: Based on our results, we provide implications for practitioners integrating generative AI-based systems into development contexts and shed light on future research directions to enhance the reliability and trustworthiness of generative AI -- aiming to increase awareness and adoption of evidence-based SE research findings in practice.
Evidence-based medicine (EBM) is at the forefront of modern healthcare, emphasizing the use of the best available scientific evidence to guide clinical decisions. Due to the sheer volume and rapid growth of medical literature and the high cost of curation, there is a critical need to investigate Natural Language Processing (NLP) methods to identify, appraise, synthesize, summarize, and disseminate evidence in EBM. This survey presents an in-depth review of 129 research studies on leveraging NLP for EBM, illustrating its pivotal role in enhancing clinical decision-making processes. The paper systematically explores how NLP supports the five fundamental steps of EBM -- Ask, Acquire, Appraise, Apply, and Assess. The review not only identifies current limitations within the field but also proposes directions for future research, emphasizing the potential for NLP to revolutionize EBM by refining evidence extraction, evidence synthesis, appraisal, summarization, enhancing data comprehensibility, and facilitating a more efficient clinical workflow.
Evidence-based medicine (EBM) plays a crucial role in the application of large language models (LLMs) in healthcare, as it provides reliable support for medical decision-making processes. Although it benefits from current retrieval-augmented generation~(RAG) technologies, it still faces two significant challenges: the collection of dispersed evidence and the efficient organization of this evidence to support the complex queries necessary for EBM. To tackle these issues, we propose using LLMs to gather scattered evidence from multiple sources and present a knowledge hypergraph-based evidence management model to integrate these evidence while capturing intricate relationships. Furthermore, to better support complex queries, we have developed an Importance-Driven Evidence Prioritization (IDEP) algorithm that utilizes the LLM to generate multiple evidence features, each with an associated importance score, which are then used to rank the evidence and produce the final retrieval results. Experimental results from six datasets demonstrate that our approach outperforms existing RAG techniques in application domains of interest to EBM, such as medical quizzing, hallucination detection, and