搜索结果：Scientific data

Most existing large-scale academic search engines are built to retrieve text-based information. However, there are no large-scale retrieval services for scientific figures and tables. One challenge for such services is understanding scientific figures' semantics, such as their types and purposes. A key obstacle is the need for datasets containing annotated scientific figures and tables, which can then be used for classification, question-answering, and auto-captioning. Here, we develop a pipeline that extracts figures and tables from the scientific literature and a deep-learning-based framework that classifies scientific figures using visual features. Using this pipeline, we built the first large-scale automatically annotated corpus, ACL-Fig, consisting of 112,052 scientific figures extracted from ~56K research papers in the ACL Anthology. The ACL-Fig-Pilot dataset contains 1,671 manually labeled scientific figures belonging to 19 categories. The dataset is accessible at https://huggingface.co/datasets/citeseerx/ACL-fig under a CC BY-NC license.

In the present academic landscape, the process of collecting data is slow, and the lax infrastructures for data collaborations lead to significant delays in coming up with and disseminating conclusive findings. Therefore, there is an increasing need for a secure, scalable, and trustworthy data-sharing ecosystem that promotes and rewards collaborative data-sharing efforts among researchers, and a robust incentive mechanism is required to achieve this objective. Reputation-based incentives, such as the h-index, have historically played a pivotal role in the academic community. However, the h-index suffers from several limitations. This paper introduces the SCIENCE-index, a blockchain-based metric measuring a researcher's scientific contributions. Utilizing the Microsoft Academic Graph and machine learning techniques, the SCIENCE-index predicts the progress made by a researcher over their career and provides a soft incentive for sharing their datasets with peer researchers. To incentivize researchers to share their data, the SCIENCE-index is augmented to include a data-sharing parameter. DataCite, a database of openly available datasets, proxies this parameter, which is further enhanc

The COVID-19 pandemic highlighted the urgent need for robust systems to enable rapid data collection, integration, and analysis for public health responses. Existing approaches often relied on disparate, non-interoperable systems, creating bottlenecks in comprehensive analyses and timely decision-making. To address these challenges, the U.S. National Institutes of Health (NIH) launched the Rapid Acceleration of Diagnostics (RADx) initiative in 2020, with the RADx Data Hub, a centralized repository for de-identified and curated COVID-19 data, as its cornerstone. The RADx Data Hub hosts diverse study data, including clinical data, testing results, smart sensor outputs, self-reported symptoms, and information on social determinants of health. Built on cloud infrastructure, the RADx Data Hub integrates metadata standards, interoperable formats, and ontology-based tools to adhere to the FAIR (Findable, Accessible, Interoperable, Reusable) principles for data sharing. Initially developed for COVID-19 research, its architecture and processes are adaptable to other scientific disciplines. This paper provides an overview of the data hosted by the RADx Data Hub and describes the platform's c

With the rapid increase of published open datasets, it is crucial to support the open data progress in smart cities while considering the open data quality. In the Czech Republic, and its National Open Data Catalogue (NODC), the open datasets are usually evaluated based on their metadata only, while leaving the content and the adherence to the recommended data structure to the sole responsibility of the data providers. The interoperability of open datasets remains unknown. This paper therefore aims to propose a novel content-aware quality evaluation framework that assesses the quality of open datasets based on five data quality dimensions. With the proposed framework, we provide a fundamental view on the interoperability-oriented data quality of Czech open datasets, which are published in NODC. Our evaluations find that domain-specific open data quality assessments are able to detect data quality issues beyond traditional heuristics used for determining Czech open data quality, increase their interoperability, and thus increase their potential to bring value for the society. The findings of this research are beneficial not only for the case of the Czech Republic, but also can be ap

Current AI models often fail to account for local context and language, given the predominance of English and Western internet content in their training data. This hinders the global relevance, usefulness, and safety of these models as they gain more users around the globe. Amplify Initiative, a data platform and methodology, leverages expert communities to collect diverse, high-quality data to address the limitations of these models. The platform is designed to enable co-creation of datasets, provide access to high-quality multilingual datasets, and offer recognition to data authors. This paper presents the approach to co-creating datasets with domain experts (e.g., health workers, teachers) through a pilot conducted in Sub-Saharan Africa (Ghana, Kenya, Malawi, Nigeria, and Uganda). In partnership with local researchers situated in these countries, the pilot demonstrated an end-to-end approach to co-creating data with 155 experts in sensitive domains (e.g., physicians, bankers, anthropologists, human and civil rights advocates). This approach, implemented with an Android app, resulted in an annotated dataset of 8,091 adversarial queries in seven languages (e.g., Luganda, Swahili,

Large Language Models (LLMs) have demonstrated advanced capabilities in both text generation and comprehension, and their application to data archives might facilitate the privatization of sensitive information about the data subjects. In fact, the information contained in data often includes sensitive and personally identifiable details. This data, if not safeguarded, may bring privacy risks in terms of both disclosure and identification. Furthermore, the application of anonymisation techniques, such as k-anonymity, can lead to a significant reduction in the amount of data within data sources, which may reduce the efficacy of predictive processes. In our study, we investigate the capabilities offered by LLMs to enrich anonymized data sources without affecting their anonymity. To this end, we designed new ad-hoc prompt template engineering strategies to perform anonymized Data Augmentation and assess the effectiveness of LLM-based approaches in providing anonymized data. To validate the anonymization guarantees provided by LLMs, we exploited the pyCanon library, designed to assess the values of the parameters associated with the most common privacy-preserving techniques via anonymi

Data science models, although successful in a number of commercial domains, have had limited applicability in scientific problems involving complex physical phenomena. Theory-guided data science (TGDS) is an emerging paradigm that aims to leverage the wealth of scientific knowledge for improving the effectiveness of data science models in enabling scientific discovery. The overarching vision of TGDS is to introduce scientific consistency as an essential component for learning generalizable models. Further, by producing scientifically interpretable models, TGDS aims to advance our scientific understanding by discovering novel domain insights. Indeed, the paradigm of TGDS has started to gain prominence in a number of scientific disciplines such as turbulence modeling, material discovery, quantum chemistry, bio-medical science, bio-marker discovery, climate science, and hydrology. In this paper, we formally conceptualize the paradigm of TGDS and present a taxonomy of research themes in TGDS. We describe several approaches for integrating domain knowledge in different research themes using illustrative examples from different disciplines. We also highlight some of the promising avenues

Data is the foundation of any scientific, industrial or commercial process. Its journey typically flows from collection to transport, storage, management and processing. While best practices and regulations guide data management and protection, recent events have underscored its vulnerability. Academic research and commercial data handling have been marred by scandals, revealing the brittleness of data management. Data, despite its importance, is susceptible to undue disclosures, leaks, losses, manipulation, or fabrication. These incidents often occur without visibility or accountability, necessitating a systematic structure for safe, honest, and auditable data management. In this paper, we introduce the concept of Honest Computing as the practice and approach that emphasizes transparency, integrity, and ethical behaviour within the realm of computing and technology. It ensures that computer systems and software operate honestly and reliably without hidden agendas, biases, or unethical practices. It enables privacy and confidentiality of data and code by design and by default. We also introduce a reference framework to achieve demonstrable data lineage and provenance, contrasting i

In many scientific fields, large language models (LLMs) have revolutionized the way text and other modalities of data (e.g., molecules and proteins) are handled, achieving superior performance in various applications and augmenting the scientific discovery process. Nevertheless, previous surveys on scientific LLMs often concentrate on one or two fields or a single modality. In this paper, we aim to provide a more holistic view of the research landscape by unveiling cross-field and cross-modal connections between scientific LLMs regarding their architectures and pre-training techniques. To this end, we comprehensively survey over 260 scientific LLMs, discuss their commonalities and differences, as well as summarize pre-training datasets and evaluation tasks for each field and modality. Moreover, we investigate how LLMs have been deployed to benefit scientific discovery. Resources related to this survey are available at https://github.com/yuzhimanhua/Awesome-Scientific-Language-Models.

Data-driven approaches to sequence-to-sequence modelling have been successfully applied to short text summarization of news articles. Such models are typically trained on input-summary pairs consisting of only a single or a few sentences, partially due to limited availability of multi-sentence training data. Here, we propose to use scientific articles as a new milestone for text summarization: large-scale training data come almost for free with two types of high-quality summaries at different levels - the title and the abstract. We generate two novel multi-sentence summarization datasets from scientific articles and test the suitability of a wide range of existing extractive and abstractive neural network-based summarization approaches. Our analysis demonstrates that scientific papers are suitable for data-driven text summarization. Our results could serve as valuable benchmarks for scaling sequence-to-sequence models to very long sequences.

The emergence of breakthrough artificial intelligence (AI) techniques has led to a renewed focus on how small data settings, i.e., settings with limited information, can benefit from such developments. This includes societal issues such as how best to include under-represented groups in data-driven policy and decision making, or the health benefits of assistive technologies such as wearables. We provide a conceptual overview, in particular contrasting small data with big data, and identify common themes from exemplary case studies and application areas. Potential solutions are described in a more detailed technical overview of current data analysis and modelling techniques, highlighting contributions from different disciplines, such as knowledge-driven modelling from statistics and data-driven modelling from computer science. By linking application settings, conceptual contributions and specific techniques, we highlight what is already feasible and suggest what an agenda for fully leveraging small data might look like.

Context: Innovation thrives on scientific software, with useful code review feedback enhancing its correctness and impact. However, unlike general-purpose commercial and open-source software, the usefulness of code review feedback (CR comment) in scientific software remains largely unstudied. Objective: This paper aims to characterize the usefulness of CR comment in scientific opens ource software (Sci-OSS), leveraging existing research on useful CR comment. Method: To achieve this objective, we mine successful Sci-OSS from GitHub, analyze their CR comments with usefulness related features, and compare the findings from prior research on general-purpose commercial and open-source CR comments. Results: The investigation on the usefulness of CR comments in SciOSS confirms many characteristics that prior research identified in general-purpose software. For example, subjective or negative CR comments remain not useful for the Sci-OSS. We also find CR comments which receive negative emoji reactions have a very small correlation with not useful comments, whereas the positive emojis show mixed correlations. Importantly, 6-33% CR comments in Sci-OSS are not useful in our mined repositories

Data similarity assumptions have traditionally been relied upon to understand the convergence behaviors of federated learning methods. Unfortunately, this approach often demands fine-tuning step sizes based on the level of data similarity. When data similarity is low, these small step sizes result in an unacceptably slow convergence speed for federated methods. In this paper, we present a novel and unified framework for analyzing the convergence of federated learning algorithms without the need for data similarity conditions. Our analysis centers on an inequality that captures the influence of step sizes on algorithmic convergence performance. By applying our theorems to well-known federated algorithms, we derive precise expressions for three widely used step size schedules: fixed, diminishing, and step-decay step sizes, which are independent of data similarity conditions. Finally, we conduct comprehensive evaluations of the performance of these federated learning algorithms, employing the proposed step size strategies to train deep neural network models on benchmark datasets under varying data similarity conditions. Our findings demonstrate significant improvements in convergence

In view of the paradigm shift that makes science ever more data-driven, in this thesis we propose a synthesis method for encoding and managing large-scale deterministic scientific hypotheses as uncertain and probabilistic data. In the form of mathematical equations, hypotheses symmetrically relate aspects of the studied phenomena. For computing predictions, however, deterministic hypotheses can be abstracted as functions. We build upon Simon's notion of structural equations in order to efficiently extract the (so-called) causal ordering between variables, implicit in a hypothesis structure (set of mathematical equations). We show how to process the hypothesis predictive structure effectively through original algorithms for encoding it into a set of functional dependencies (fd's) and then performing causal reasoning in terms of acyclic pseudo-transitive reasoning over fd's. Such reasoning reveals important causal dependencies implicit in the hypothesis predictive data and guide our synthesis of a probabilistic database. Like in the field of graphical models in AI, such a probabilistic database should be normalized so that the uncertainty arisen from competing hypotheses is decompose

Remote sensing image object detection (RSIOD) aims to identify and locate specific objects within satellite or aerial imagery. However, there is a scarcity of labeled data in current RSIOD datasets, which significantly limits the performance of current detection algorithms. Although existing techniques, e.g., data augmentation and semi-supervised learning, can mitigate this scarcity issue to some extent, they are heavily dependent on high-quality labeled data and perform worse in rare object classes. To address this issue, this paper proposes a layout-controllable diffusion generative model (i.e. AeroGen) tailored for RSIOD. To our knowledge, AeroGen is the first model to simultaneously support horizontal and rotated bounding box condition generation, thus enabling the generation of high-quality synthetic images that meet specific layout and object category requirements. Additionally, we propose an end-to-end data augmentation framework that integrates a diversity-conditioned generator and a filtering mechanism to enhance both the diversity and quality of generated data. Experimental results demonstrate that the synthetic data produced by our method are of high quality and diversit

Scientific collaborations are among the main enablers of development in small national science systems. Although analysing scientific collaborations is a well-established subject in scientometrics, evaluations of scientific collaborations within a country remain speculative with studies based on a limited number of fields or using data too inadequate to be representative of collaborations at a national level. This study represents a unique view on the collaborative aspect of scientific activities in New Zealand. We perform a quantitative study based on all Scopus publications in all subjects for more than 1500 New Zealand institutions over a period of 6 years to generate an extensive mapping of scientific collaboration at a national level. The comparative results reveal the level of collaboration between New Zealand institutions and business enterprises, government institutions, higher education providers, and private not for profit organisations in 2010-2015. Constructing a collaboration network of institutions, we observe a power-law distribution indicating that a small number of New Zealand institutions account for a large proportion of national collaborations. Network centralit

We introduce a use case and propose a system for data and knowledge integration in life sciences. In particular, we focus on linking clinical resources (electronic patient records) with scientific documents and data (research articles, biomedical ontologies and databases). Our motivation is two-fold. Firstly, we aim to instantly provide scientific context of particular patient cases for clinicians in order for them to propose treatments in a more informed way. Secondly, we want to build a technical infrastructure for researchers that will allow them to semi-automatically formulate and evaluate their hypothesis against longitudinal patient data. This paper describes the proposed system and its typical usage in a broader context of KI2NA, an ongoing collaboration between the DERI research institute and Fujitsu Laboratories. We introduce an architecture of the proposed framework called KI2NA-LHC (for Linked Health Care) and outline the details of its implementation. We also describe typical usage scenarios and propose a methodology for evaluation of the whole framework. The main goal of this paper is to introduce our ongoing work to a broader expert audience. By doing so, we aim to es

This document defines the high level metadata necessary to describe the physical parameter space of observed or simulated astronomical data sets, such as 2D-images, data cubes, X-ray event lists, IFU data, etc.. The Characterisation data model is an abstraction which can be used to derive a structured description of any relevant data and thus to facilitate its discovery and scientific interpretation. The model aims at facilitating the manipulation of heterogeneous data in any VO framework or portal. A VO Characterisation instance can include descriptions of the data axes, the range of coordinates covered by the data, and details of the data sampling and resolution on each axis. These descriptions should be in terms of physical variables, independent of instrumental signatures as far as possible. Implementations of this model has been described in the IVOA Note available at: http://www.ivoa.net/Documents/latest/ImplementationCharacterisation.html Utypes derived from this version of the UML model are listed and commented in the following IVOA Note: http://www.ivoa.net/Documents/latest/UtypeListCharacterisationDM.html An XML schema has been build up from the UML model and is available