Respiratory rate is a vital indicator of pulmonary and cardiovascular health, yet conventional methods for estimating respiratory rate are often intrusive due to their contact-based nature. Remote photoplethysmography offers a promising non-contact alternative and has been widely used for heart rate estimation; however, its potential for respiratory rate estimation remains underexplored. Existing methods typically adapt green and chrominance-based projections originally designed for heart rate estimation, which only partially capture respiratory dynamics. Most prior work focuses on the Eulerian representation with fixed or empirically selected RGB projections. To address these gaps, we propose a skin-tone-aware dynamic RGB signal projection that captures respiratory information. To mitigate the sensitivity of the Lagrangian representation to non-respiratory motion, we introduce a denoising network for motion-based remote photoplethysmography signals. We further design a phase-independent contrastive loss that enables Eulerian and Lagrangian representations to collaboratively learn respiratory rate information. We also introduce RR-rPPG, a respiratory-rate facial video dataset with
Respiratory activity is a direct and interpretable physiological channel for wearable stress and affective-state recognition, yet many studies emphasize classification accuracy without identifying which respiratory properties separate different states. This work reframes RESP-based recognition as a joint predictive and explanatory problem. Using the chest respiratory channel of the WESAD dataset, we analyze 60 s windows under leave-one-subject-out validation and combine two complementary branches: compact raw-signal one-dimensional convolutional neural networks (1D-CNNs) and physically grouped handcrafted respiratory signatures. The primary application task is binary stress versus non-stress detection, while baseline, stress, amusement, and meditation are additionally analyzed in a one-vs-rest setting to reveal state-specific respiratory markers. The feature space is organized into respiratory timing, breath-to-breath variability, waveform statistics, spectral/time-frequency descriptors, and autocorrelation/nonlinear predictability descriptors, with the raw 60 s signal treated as a sixth representation for the CNN branch. We introduce autocorrelation transition lags (Zpm/Zmp) as in
Software is at the core of most scientific discoveries today. Therefore, the quality of research results highly depends on the quality of the research software. Rigorous testing, as we know it from software engineering in the industry, could ensure the quality of the research software but it also requires a substantial effort that is often not rewarded in academia. Therefore, this research explores the effects of research software testing integrated into teaching on research software. In an in-vivo experiment, we integrated the engineering of a test suite for a large-scale network simulation as group projects into a course on software testing at the Blekinge Institute of Technology, Sweden, and qualitatively measured the effects of this integration on the research software. We found that the research software benefited from the integration through substantially improved documentation and fewer hardware and software dependencies. However, this integration was effortful and although the student teams developed elegant and thoughtful test suites, no code by students went directly into the research software since we were not able to make the integration back into the research software
Recognition of respiratory distress through visual inspection is a life saving clinical skill. Clinicians can detect early signs of respiratory deterioration, creating a valuable window for earlier intervention. In this study, we evaluate whether recent advances in video transformers can enable Artificial Intelligence systems to recognize the signs of respiratory distress from video. We collected videos of healthy volunteers recovering after strenuous exercise and used the natural recovery of each participants respiratory status to create a labeled dataset for respiratory distress. Splitting the video into short clips, with earlier clips corresponding to more shortness of breath, we designed a temporal ordering challenge to assess whether an AI system can detect respiratory distress. We found a ViViT encoder augmented with Lie Relative Encodings (LieRE) and Motion Guided Masking, combined with an embedding based comparison strategy, can achieve an F1 score of 0.81 on this task. Our findings suggest that modern video transformers can recognize subtle changes in respiratory mechanics.
High temperatures are associated with adverse respiratory health outcomes and increases in ambient air pollution. Limited research has quantified air pollution's mediating role in the relationship between temperature and respiratory morbidity, such as emergency department (ED) visits. In this study, we conducted a causal mediation analysis to decompose the total effect of daily temperature on respiratory ED visits in Los Angeles from 2005 to 2016. We focused on ambient ozone as a mediator because its precursors and formation are directly driven by sunlight and temperature. We estimated natural direct, indirect, and total effects on the relative risk scale across deciles of temperature exposure compared to the median. We utilized Bayesian additive regression trees (BART) to flexibly characterize the nonlinear relationship between temperature and ozone and quantified uncertainty via posterior prediction and the Bayesian bootstrap. Our results showed that ozone partially mediated the association between high temperatures and respiratory ED visits, particularly at moderately high temperatures. We also validated our modeling approach through simulation studies. This study extends the ex
Auscultation is a key method for early diagnosis of respiratory and pulmonary diseases, relying on skilled healthcare professionals. However, the process is often subjective, with variability between experts. As a result, numerous deep learning-based automatic classification methods have emerged, most of which focus on respiratory sound classification. In contrast, research on respiratory sound event detection remains limited. Existing sound event detection methods typically rely on frame-level predictions followed by post-processing to generate event-level outputs, making interval boundaries challenging to learn directly. Furthermore, many approaches can only handle fixed-length audio, limiting their applicability to variable-length respiratory sounds. Additionally, the impact of respiratory sound location information on detection performance has not been extensively explored. To address these issues, we propose a graph neural network-based framework with anchor intervals, capable of handling variable-length audio and providing more precise temporal localization for abnormal respiratory sound events. Our method improves both the flexibility and applicability of respiratory sound d
This paper presents a scientometric analysis of research output from the University of Lagos, focusing on the two decades spanning 2004 to 2023. Using bibliometric data retrieved from the Web of Science, we examine trends in publication volume, collaboration patterns, citation impact, and the most prolific authors, departments, and research domains at the university. The study reveals a consistent increase in research productivity, with the highest publication output recorded in 2023. Health Sciences, Engineering, and Social Sciences are identified as dominant fields, reflecting the university's interdisciplinary research strengths. Collaborative efforts, both locally and internationally, show a positive correlation with higher citation impact, with the United States and the United Kingdom being the leading international collaborators. Notably, open-access publications account for a significant portion of the university's research output, enhancing visibility and citation rates. The findings offer valuable insights into the university's research performance over the past two decades, providing a foundation for strategic planning and policy formulation to foster research excellence
Scientists' topic choices strongly influence both individual careers and the advancement of the scientific frontier. While a sizeable body of literature shows that specialisation in a few topics benefits individual careers and fosters impactful research, the role of research teams and their experience have been largely overlooked. This paper introduces experience as a concept distinct from specialisation and shifts the level of analysis from the individual to the research team, reflecting the increasingly team-based nature of science. Using novel publication-level measures of team specialisation and team experience applied to nearly 1 million biomedical publications, the study finds that both are positively associated with citation impact. However, the correlation with citation impact is markedly stronger for team experience than for team specialisation. The study demonstrates how science can be examined at the team level and suggests that future research should pay more attention to studying experience.
Demographic data collection is essential in education research, as demographic data allows researchers to better describe the participant population they study and to contextualize findings. However, current research practices for neurodiversity demographics often rely on prescriptive methods (e.g., requiring participants to report official diagnoses) rather than allowing participants to self-identify. This approach can: a) not allow participants to express their intersecting identities in ways that are authentic; and b) limit trustworthiness and reliability of the data and interpretation. In addition, inconsistent dissemination and representation of demographic data across studies hinder the accessibility and usability of this work. Through a literature review of neurodivergent student experiences with learning and performing STEM, we identified widespread discrepancies in how demographic information is collected and reported. This paper explores how neurodivergent identities can be more accurately and inclusively represented in education research. We present findings of a thematic analysis on the ways neurodivergent demographic data collection is done in the literature using data
Auscultatory analysis using an electronic stethoscope has attracted increasing attention in the clinical diagnosis of respiratory diseases. Recently, neural networks have been applied to assist in respiratory sound classification with achievements. However, it remains challenging due to the scarcity of abnormal respiratory sound. In this paper, we propose a novel architecture, namely Waveform-Logmel audio neural networks (WLANN), which uses both waveform and log-mel spectrogram as the input features and uses Bidirectional Gated Recurrent Units (Bi-GRU) to context model the fused features. Experimental results of our WLANN applied to SPRSound respiratory dataset show that the proposed framework can effectively distinguish pathological respiratory sound classes, outperforming the previous studies, with 90.3% in sensitivity and 93.6% in total score. Our study demonstrates the high effectiveness of the WLANN in the diagnosis of respiratory diseases.
This scientometric study analyzes Avian Influenza research from 2014 to 2023 using bibliographic data from the Web of Science database. We examined publication trends, sources, authorship, collaborative networks, document types, and geographical distribution to gain insights into the global research landscape. Results reveal a steady increase in publications, with high contributions from Chinese and American institutions. Journals such as PLoS One and the Journal of Virology published the highest number of studies, indicating their influence in this field. The most prolific institutions include the Chinese Academy of Sciences and the University of Hong Kong, while the College of Veterinary Medicine at South China Agricultural University emerged as the most productive department. China and the USA lead in publication volume, though developed nations like the United Kingdom and Germany exhibit a higher rate of international collaboration. "Articles" are the most common document type, constituting 84.6% of the total, while "Reviews" account for 7.6%. This study provides a comprehensive view of global trends in Avian Influenza research, emphasizing the need for collaborative efforts ac
Auscultation remains a cornerstone of clinical practice, essential for both initial evaluation and continuous monitoring. Clinicians listen to the lung sounds and make a diagnosis by combining the patient's medical history and test results. Given this strong association, multitask learning (MTL) can offer a compelling framework to simultaneously model these relationships, integrating respiratory sound patterns with disease manifestations. While MTL has shown considerable promise in medical applications, a significant research gap remains in understanding the complex interplay between respiratory sounds, disease manifestations, and patient metadata attributes. This study investigates how integrating MTL with cutting-edge deep learning architectures can enhance both respiratory sound classification and disease diagnosis. Specifically, we extend recent findings regarding the beneficial impact of metadata on respiratory sound classification by evaluating its effectiveness within an MTL framework. Our comprehensive experiments reveal significant improvements in both lung sound classification and diagnostic performance when the stethoscope information is incorporated into the MTL archite
Pre-trained deep learning models, known as foundation models, have become essential building blocks in machine learning domains such as natural language processing and image domains. This trend has extended to respiratory and heart sound models, which have demonstrated effectiveness as off-the-shelf feature extractors. However, their evaluation benchmarking has been limited, resulting in incompatibility with state-of-the-art (SOTA) performance, thus hindering proof of their effectiveness. This study investigates the practical effectiveness of off-the-shelf audio foundation models by comparing their performance across four respiratory and heart sound tasks with SOTA fine-tuning results. Experiments show that models struggled on two tasks with noisy data but achieved SOTA performance on the other tasks with clean data. Moreover, general-purpose audio models outperformed a respiratory sound model, highlighting their broader applicability. With gained insights and the released code, we contribute to future research on developing and leveraging foundation models for respiratory and heart sounds.
Monitoring respiration parameters such as respiratory rate could be beneficial to understand the impact of training on equine health and performance and ultimately improve equine welfare. In this work, we compare deep learning-based methods to an adapted signal processing method to automatically detect cyclic respiratory events and extract the dynamic respiratory rate from microphone recordings during high intensity exercise in Standardbred trotters. Our deep learning models are able to detect exhalation sounds (median F1 score of 0.94) in noisy microphone signals and show promising results on unlabelled signals at lower exercising intensity, where the exhalation sounds are less recognisable. Temporal convolutional networks were better at detecting exhalation events and estimating dynamic respiratory rates (median F1: 0.94, Mean Absolute Error (MAE) $\pm$ Confidence Intervals (CI): 1.44$\pm$1.04 bpm, Limits Of Agreements (LOA): 0.63$\pm$7.06 bpm) than long short-term memory networks (median F1: 0.90, MAE$\pm$CI: 3.11$\pm$1.58 bpm) and signal processing methods (MAE$\pm$CI: 2.36$\pm$1.11 bpm). This work is the first to automatically detect equine respiratory sounds and automatically
Compared with invasive examinations that require tissue sampling, respiratory sound testing is a non-invasive examination method that is safer and easier for patients to accept. In this study, we introduce Rene, a pioneering large-scale model tailored for respiratory sound recognition. Rene has been rigorously fine-tuned with an extensive dataset featuring a broad array of respiratory audio samples, targeting disease detection, sound pattern classification, and event identification. Our innovative approach applies a pre-trained speech recognition model to process respiratory sounds, augmented with patient medical records. The resulting multi-modal deep-learning framework addresses interpretability and real-time diagnostic challenges that have hindered previous respiratory-focused models. Benchmark comparisons reveal that Rene significantly outperforms existing models, achieving improvements of 10.27%, 16.15%, 15.29%, and 18.90% in respiratory event detection and audio classification on the SPRSound database. Disease prediction accuracy on the ICBHI database improved by 23% over the baseline in both mean average and harmonic scores. Moreover, we have developed a real-time respirator
Modern research heavily relies on software. A significant challenge researchers face is understanding the complex software used in specific research fields. We target two scenarios in this context, namely long onboarding times for newcomers and conference reviewers evaluating replication packages. We hypothesize that both scenarios can be significantly improved when there is a clear link between the paper's ideas and the code that implements them. As a time- and staff-saving approach, we propose an LLM-based automation tool that takes in a paper and the software implementing the paper, and generates a trace mapping between research ideas and their locations in code. Initial experiments have shown that the tool can generate quite useful mappings.
Respiratory audio, such as coughing and breathing sounds, has predictive power for a wide range of healthcare applications, yet is currently under-explored. The main problem for those applications arises from the difficulty in collecting large labeled task-specific data for model development. Generalizable respiratory acoustic foundation models pretrained with unlabeled data would offer appealing advantages and possibly unlock this impasse. However, given the safety-critical nature of healthcare applications, it is pivotal to also ensure openness and replicability for any proposed foundation model solution. To this end, we introduce OPERA, an OPEn Respiratory Acoustic foundation model pretraining and benchmarking system, as the first approach answering this need. We curate large-scale respiratory audio datasets (~136K samples, over 400 hours), pretrain three pioneering foundation models, and build a benchmark consisting of 19 downstream respiratory health tasks for evaluation. Our pretrained models demonstrate superior performance (against existing acoustic models pretrained with general audio on 16 out of 19 tasks) and generalizability (to unseen datasets and new respiratory audio
Recent advancements in foundation models have sparked interest in respiratory audio foundation models. However, the effectiveness of applying conventional pre-training schemes to datasets that are small-sized and lack diversity has not been sufficiently verified. This study aims to explore better pre-training practices for respiratory sounds by comparing numerous pre-trained audio models. Our investigation reveals that models pre-trained on AudioSet, a general audio dataset, are more effective than the models specifically pre-trained on respiratory sounds. Moreover, combining AudioSet and respiratory sound datasets for further pre-training enhances performance, and preserving the frequency-wise information when aggregating features is vital. Along with more insights found in the experiments, we establish a new state-of-the-art for the OPERA benchmark, contributing to advancing respiratory audio foundation models. Our code is available online at https://github.com/nttcslab/eval-audio-repr/tree/main/plugin/OPERA.
Respiratory motion limits the accuracy and precision of abdominal percutaneous procedures. In this paper, respiratory motion is compensated robotically using motion estimation models. Additionally, a teleoperated insertion is performed using proximity-based haptic feedback to guide physicians during insertion, enabling a radiation-free remote insertion for the end-user. The study has been validated using a robotic liver phantom, and five insertions were performed. The resulting motion estimation errors were below 3 mm for all directions of motion, and the overall resulting 3D insertion errors were 2.60, 7.75, and 2.86 mm for the superior-inferior, lateral, and anterior-posterior directions of motion, respectively. The proposed approach is expected to minimize the chances of inaccurate treatment or diagnosis due to respiratory-induced motion and reduce radiation exposure.
Respiratory diseases impose a significant burden on global health, with current diagnostic and management practices primarily reliant on specialist clinical testing. This work aims to develop machine learning-based algorithms to facilitate at-home respiratory disease monitoring and assessment for patients undergoing continuous positive airway pressure (CPAP) therapy. Data were collected from 30 healthy adults, encompassing respiratory pressure, flow, and dynamic thoraco-abdominal circumferential measurements under three breathing conditions: normal, panting, and deep breathing. Various machine learning models, including the random forest classifier, logistic regression, and support vector machine (SVM), were trained to predict breathing types. The random forest classifier demonstrated the highest accuracy, particularly when incorporating breathing rate as a feature. These findings support the potential of AI-driven respiratory monitoring systems to transition respiratory assessments from clinical settings to home environments, enhancing accessibility and patient autonomy. Future work involves validating these models with larger, more diverse populations and exploring additional mac