A computational framework integrating optimization algorithms, parallel computing and plant physiology was developed to explore crop ideotype design. The backbone of the framework is a plant physiology model that accurately tracks water use (i.e. a plant hydraulic model) coupled with mass transport (CO2 exchange and transport), energy conversion (leaf temperature due to radiation, convection and mass transfer) and photosynthetic biochemistry of an adult maize plant. For a given trait configuration, soil parameters and hourly weather data, the model computes water use and photosynthetic output over the life of an adult maize plant. We coupled this validated model with a parallel, meta-heuristic optimization algorithm, specifically a genetic algorithm (GA), to identify trait sets (ideotypes) that resulted in desired water use behavior of the adult maize plant. We detail features of the model as well as the implementation details of the coupling with the optimization framework and deployment on high performance computing platforms. We illustrate a representative result of this framework by identifying maize ideotypes with optimized photosynthetic yields using weather and soil conditio
This paper briefly describes the device - the phytosensor - for measuring physiological and electrophysiological parameters of plants. This system is developed as a bio-physiological sensor in precise agriculture, as a tool in plant research and environmental biology, and for plant enthusiasts in smart home or entertainment applications. The phytosentor measures main physiological parameters such as the leaf transpiration rate, sap flow, tissue conductivity and frequency response, biopotentials (action potentials and variation potentials), and can conduct electrochemical impedance spectroscopy with organic tissues. Soil moisture and temperature, air quality (CO2, NO2, O3 and other sensors on I2C bus), and general environmental parameters (light, temperature, humidity, air pressure, electromagnetic and magnetic fields) are also recorded in real time. In addition to phytosensing, the device can also perform phytoactuation, i.e. execute electrical or light stimulation of plants, control irrigation and lighting modes, conduct fully autonomous experiments with complex feedback-based and adaptive scenarios in robotic or biohybrid systems. This article represents the revised and extended
Global plant maps of plant traits, such as leaf nitrogen or plant height, are essential for understanding ecosystem processes, including the carbon and energy cycles of the Earth system. However, existing trait maps remain limited by the high cost and sparse geographic coverage of field-based measurements. Citizen science initiatives offer a largely untapped resource to overcome these limitations, with over 50 million geotagged plant photographs worldwide capturing valuable visual information on plant morphology and physiology. In this study, we introduce PlantTraitNet, a multi-modal, multi-task uncertainty-aware deep learning framework that predictsfour key plant traits (plant height, leaf area, specific leaf area, and nitrogen content) from citizen science photos using weak supervision. By aggregating individual trait predictions across space, we generate global maps of trait distributions. We validate these maps against independent vegetation survey data (sPlotOpen) and benchmark them against leading global trait products. Our results show that PlantTraitNet consistently outperforms existing trait maps across all evaluated traits, demonstrating that citizen science imagery, when
Visually cataloging and quantifying the natural world requires pushing the boundaries of both detailed visual classification and counting at scale. Despite significant progress, particularly in crowd and traffic analysis, the fine-grained, taxonomy-aware plant counting remains underexplored in vision. In contrast to crowds, plants exhibit nonrigid morphologies and physical appearance variations across growth stages and environments. To fill this gap, we present TPC-268, the first plant counting benchmark incorporating plant taxonomy. Our dataset couples instance-level point annotations with Linnaean labels (kingdom -> species) and organ categories, enabling hierarchical reasoning and species-aware evaluation. The dataset features 10,000 images with 678,050 point annotations, includes 268 countable plant categories over 242 plant species in Plantae and Fungi, and spans observation scales from canopy-level remote sensing imagery to tissue-level microscopy. We follow the problem setting of class-agnostic counting (CAC), provide taxonomy-consistent, scale-aware data splits, and benchmark state-of-the-art regression- and detection-based CAC approaches. By capturing the biodiversity,
Plants display physical displacements during their growth due to photosynthesis, which converts light into chemical energy. This can be interpreted as plants acting as actuators with a built-in power source. This paper presents a method to create plant robots that move and perform tasks by harnessing the actuation output of plants: displacement and force generated from the growing process. As the target plant, radish sprouts are employed, and their displacement and force are characterized, followed by the calculation of power and energy densities. Based on the characterization, two different plant robots are designed and fabricated: a rotational robot and a gripper. The former demonstrates ground locomotion, achieving a travel distance of 14.6 mm with an average speed of 0.8 mm/h. The latter demonstrates the picking and placing of an object with a 0.1-g mass by the light-controlled open-close motion of plant fingers. A good agreement between the experimental and model values is observed in the specific data of the mobile robot, suggesting that obtaining the actuation characteristics of plants can enable the design and prediction of behavior in plant robots. These results pave the w
The rapid advancement of transformer-based language models has catalyzed breakthroughs in biomedical and clinical natural language processing; however, plant science remains markedly underserved by such domain-adapted tools. In this work, we present PlantDeBERTa, a high-performance, open-source language model specifically tailored for extracting structured knowledge from plant stress-response literature. Built upon the DeBERTa architecture-known for its disentangled attention and robust contextual encoding-PlantDeBERTa is fine-tuned on a meticulously curated corpus of expert-annotated abstracts, with a primary focus on lentil (Lens culinaris) responses to diverse abiotic and biotic stressors. Our methodology combines transformer-based modeling with rule-enhanced linguistic post-processing and ontology-grounded entity normalization, enabling PlantDeBERTa to capture biologically meaningful relationships with precision and semantic fidelity. The underlying corpus is annotated using a hierarchical schema aligned with the Crop Ontology, encompassing molecular, physiological, biochemical, and agronomic dimensions of plant adaptation. PlantDeBERTa exhibits strong generalization capabiliti
We present a comprehensive investigation into plant bioelectric responses to human presence and emotional states, building on five years of systematic research. Using custom-built plant sensors and machine learning classification, we demonstrate that plants generate distinct bioelectric signals correlating with human proximity, emotional states, and physiological conditions. A deep learning model based on ResNet50 architecture achieved 97% accuracy in classifying human emotional states through plant voltage spectrograms, while control models with shuffled labels achieved only 30% accuracy. This study synthesizes findings from multiple experiments spanning 2020-2025, including individual recognition (66% accuracy), eurythmic gesture detection, stress prediction, and responses to human voice and movement. We propose that these phenomena represent evolved anti-herbivory early warning systems, where plants detect approaching animals through bioelectric field changes before physical contact. Our results challenge conventional understanding of plant sensory capabilities and suggest practical applications in agriculture, healthcare, and human-plant interaction research.
Since Charles Darwin's time, the study of climbing plants on a cylindrical stake has been the subject of numerous articles in plant biology. One of the main ideas for studying the coiling of an elastic plant stem is to consider the growth of the plant stem in terms of evolution over time. However, as this development takes place over a long time scale, the static study alone has not been studied independently. Our static approach requires us to take into account elasticity, turgor pressure and gravity forces in a first analysis. The aim of this article is to present a simplified model demonstrating why plant stems climb mainly on their circular helix-shaped stakes, with the diameter of the stake playing an important role in plant stem ascent, as does the fineness of the stem. To perform this calculation, for a given mass density, we consider the variational principle of minimum energy. For thin plant stems, we can see, in first approximation, that the effect of gravity and turgor pressure can be neglected with respect to the energy of elasticity, and that the bulk of the calculation concerns elasticity terms.
This paper presents the Sesame Plant Segmentation Dataset, an open source annotated image dataset designed to support the development of artificial intelligence models for agricultural applications, with a specific focus on sesame plants. The dataset comprises 206 training images, 43 validation images, and 43 test images in YOLO compatible segmentation format, capturing sesame plants at early growth stages under varying environmental conditions. Data were collected using a high resolution mobile camera from farms in Jirdede, Daura Local Government Area, Katsina State, Nigeria, and annotated using the Segment Anything Model version 2 with farmer supervision. Unlike conventional bounding box datasets, this dataset employs pixel level segmentation to enable more precise detection and analysis of sesame plants in real world farm settings. Model evaluation using the Ultralytics YOLOv8 framework demonstrated strong performance for both detection and segmentation tasks. For bounding box detection, the model achieved a recall of 79 percent, precision of 79 percent, mean average precision at IoU 0.50 of 84 percent, and mean average precision from 0.50 to 0.95 of 58 percent. For segmentation
Plant classification is vital for ecological conservation and agricultural productivity, enhancing our understanding of plant growth dynamics and aiding species preservation. The advent of deep learning (DL) techniques has revolutionized this field by enabling autonomous feature extraction, significantly reducing the dependence on manual expertise. However, conventional DL models often rely solely on single data sources, failing to capture the full biological diversity of plant species comprehensively. Recent research has turned to multimodal learning to overcome this limitation by integrating multiple data types, which enriches the representation of plant characteristics. This shift introduces the challenge of determining the optimal point for modality fusion. In this paper, we introduce a pioneering multimodal DL-based approach for plant classification with automatic modality fusion. Utilizing the multimodal fusion architecture search, our method integrates images from multiple plant organs -- flowers, leaves, fruits, and stems -- into a cohesive model. To address the lack of multimodal datasets, we contributed Multimodal-PlantCLEF, a restructured version of the PlantCLEF2015 dat
Overcoming the strong chlorophyll background poses a significant challenge for measuring and optimizing plant growth. This research investigates the novel application of specialized quantum light emitters introduced into intact leaves of tobacco (Nicotiana tabacum), a well-characterized model plant system for studies of plant health and productivity. Leaves were harvested from plants cultivated under two distinct conditions: low light (LL), representing unhealthy leaves with reduced photosynthesis. and high light (HL), representing healthy leaves with highly active photosynthesis. Higher-order correlation data were collected and analyzed using machine learning (ML) techniques, specifically a Convolutional Neural Network (CNN), to classify the photon emitter states. This CNN efficiently identified unique patterns and created distinct fingerprints for Nicotiana leaves grown under LL and HL, demonstrating significantly different quantum profiles between the two conditions. These quantum fingerprints serve as a foundation for a novel unified analysis of plant growth parameters associated with different photosynthetic states. By employing CNN, the emitter profiles were able to reproduci
Camouflaged Object Detection (COD) aims to detect objects with camouflaged properties. Although previous studies have focused on natural (animals and insects) and unnatural (artistic and synthetic) camouflage detection, plant camouflage has been neglected. However, plant camouflage plays a vital role in natural camouflage. Therefore, this paper introduces a new challenging problem of Plant Camouflage Detection (PCD). To address this problem, we introduce the PlantCamo dataset, which comprises 1,250 images with camouflaged plants representing 58 object categories in various natural scenes. To investigate the current status of plant camouflage detection, we conduct a large-scale benchmark study using 20+ cutting-edge COD models on the proposed dataset. Due to the unique characteristics of plant camouflage, including holes and irregular borders, we developed a new framework, named PCNet, dedicated to PCD. Our PCNet surpasses performance thanks to its multi-scale global feature enhancement and refinement. Finally, we discuss the potential applications and insights, hoping this work fills the gap in fine-grained COD research and facilitates further intelligent ecology research. All reso
Rapid environmental change and advances in data-driven analysis highlight the need not only to use computational tools, but also to foster understanding of the natural world and inspire creativity. Photosynthesis, the process that fuels nearly all life on Earth, provides a compelling context for such learning, particularly in understanding how plants alter their photosynthetic strategies in response to environmental changes. However, existing tools for studying photosynthesis are often inaccessible or limited to demonstrating its presence, rather than capturing its temporal dynamics. We present PhytoBits, a frugal in situ gas-exchange sensing toolkit for distinguishing and teaching photosynthetic strategies. PhytoBits combines leaf enclosure with accessible materials, an off-the-shelf CO2 sensor, and a low-cost microcontroller, to support multi-day monitoring of plant gas-exchange in educational and research contexts. We validated PhytoBits against research-grade gas-exchange systems, confirming that it identifies C3 and CAM (Crassulacean Acid Metabolism) photosynthetic pathways. In addition to obligate CAM, PhytoBits also resolves facultative CAM and developmental CAM dynamics in
In plant-pollinator communities many pollinators are potential generalists and their preferences for certain plants can change quickly in response to changes in plant and pollinator densities. These changes in preferences affect coexistence within pollinator guilds as well as within plant guilds. Using a mathematical model, we study how adaptations of pollinator preferences influence population dynamics of a two-plant-two-pollinator community interaction module. Adaptation leads to coexistence between generalist and specialist pollinators, and produces complex plant population dynamics, involving alternative stable states and discrete transitions in the plant community. Pollinator adaptation also leads to plant-plant apparent facilitation that is mediated by changes in pollinator preferences. We show that adaptive pollinator behavior reduces niche overlap and leads to coexistence by specialization on different plants. Thus, this article documents how adaptive pollinator preferences for plants change the structure and coexistence of plant-pollinator communities.
Plant phenotyping (Guo et al. 2021; Pieruschka et al. 2019) focuses on studying the diverse traits of plants related to the plants' growth. To be more specific, by accurately measuring the plant's anatomical, ontogenetical, physiological and biochemical properties, it allows identifying the crucial factors of plants' growth in different environments. One commonly used approach is to predict the plant's traits using hyperspectral reflectance (Yendrek et al. 2017; Wang et al. 2021). However, the data distributions of the hyperspectral reflectance data in plant phenotyping might vary in different environments for different plants. That is, it would be computationally expansive to learn the machine learning models separately for one plant in different environments. To solve this problem, we focus on studying the knowledge transferability of modern machine learning models in plant phenotyping. More specifically, this work aims to answer the following questions. (1) How is the performance of conventional machine learning models, e.g., partial least squares regression (PLSR), Gaussian process regression (GPR) and multi-layer perceptron (MLP), affected by the number of annotated samples fo
Plant life plays a critical role in the ecosystem. However, it is difficult for humans to perceive plants' reactions because the biopotential and biochemical responses are invisible to humans. Guttation droplets contain various chemicals which can reflect plant physiology and environmental conditions in real-time. Traditionally, these droplets are collected manually and analyzed in the lab with expensive instruments. Here, we introduce the Guttation Monitor, an on-site and low-cost monitoring technology for guttation droplets. It consists of three parts 1) a paper-based microfluidic chip that can collect guttation droplets and perform colorimetric detection of six chemicals, 2) a self-contained and solar-powered camera module that can capture the result from the chip, and 3) an end-user app that can interpret the result. We discuss this technology's design and implementation, conduct evaluations on tomato plants, conduct interviews, and envision how such a technology could enhance the human-plant relationship in four dimensions.
We use the optimal foraging theory to study coexistence between two plant species and a generalist pollinator. We compare conditions for plant coexistence for non-adaptive vs. adaptive pollinators that adjust their foraging strategy to maximize fitness. When pollinators have fixed preferences, we show that plant coexistence typically requires both weak competition between plants for resources (e.g., space or nutrients) and pollinator preferences that are not too biased in favour of either plant. We also show how plant coexistence is promoted by indirect facilitation via the pollinator. When pollinators are adaptive foragers, pollinator's diet maximizes pollinator's fitness measured as the per capita population growth rate. Simulations show that this has two conflicting consequences for plant coexistence. On the one hand, when competition between pollinators is weak, adaptation favours pollinator specialization on the more profitable plant which increases asymmetries in plant competition and makes their coexistence less likely. On the other hand, when competition between pollinators is strong, adaptation promotes generalism, which facilitates plant coexistence. In addition, adaptive
Plant-soil feedback is recognized as a causal mechanism for the emergence of vegetation patterns of the same species especially when water is not a limiting resource (e.g. humid environments). Nevertheless, in the field, plants rarely grow in monoculture but compete with other plant species. In these cases, plant-soil feedback was shown to play a key role in plant-species coexistence. Using a mathematical model consisting of four PDEs, we investigate mechanisms of inter- and intra-specific plant-soil feedback on the coexistence of two competing plant species. In particular, the model takes into account both negative and positive feedback influencing the growth of the same and the other plant species. Both the coexistence of the plant species and the dominance of a particular plant species is examined with respect to all model parameters together with the emergence of spatial vegetation patterns.
Robots in tomato greenhouses need to perceive the plant and plant parts accurately to automate monitoring, harvesting, and de-leafing tasks. Existing perception systems struggle with the high levels of occlusion in plants and often result in poor perception accuracy. One reason for this is because they use fixed cameras or predefined camera movements. Next-best-view (NBV) planning presents an alternate approach, in which the camera viewpoints are reasoned and strategically planned such that the perception accuracy is improved. However, existing NBV-planning algorithms are agnostic to the task-at-hand and give equal importance to all the plant parts. This strategy is inefficient for greenhouse tasks that require targeted perception of specific plant parts, such as the perception of leaf nodes for de-leafing. To improve targeted perception in complex greenhouse environments, NBV planning algorithms need an attention mechanism to focus on the task-relevant plant parts. In this paper, the role of attention in improving targeted perception using an attention-driven NBV planning strategy was investigated. Through simulation experiments using plants with high levels of occlusion and struc
This paper describes three experiments measuring interaction of humans with garden plants. In particular, body movement of a human conducting eurythmic dances near the plants (beetroots, tomatoes, lettuce) is correlated with the action potential measured by a plant SpikerBox, a device measuring the electrical activity of plants, and the leaf movement of the plant, tracked with a camera. The first experiment shows that our measurement system captures external stimuli identically for different plants, validating the measurement system. The second experiment illustrates that the plants' response is correlated to the movements of the dancer. The third experiment indicates that plants that have been exposed for multiple weeks to eurythmic dancing might respond differently to plants which are exposed for the first time to eurythmic dancing.