搜索结果：Microbiology resource announcements

We report 804 metagenome-assembled genomes (MAGs) reconstructed from a water conditioning tank during the establishment of an artificial seawater aquarium at SEA LIFE Nagoya. These MAGs were assigned to 27 phyla (26 bacterial phyla and 1 archaeal phylum), providing a genome-resolved resource for investigating the microbial diversity of artificially managed marine environments.

We report the complete genome sequences of Bifidobacterium breve Y490 and Bifidobacterium longum subsp. infantis E16. These genomic resources will facilitate research into the mechanisms underlying the utilization of glycoconjugate-derived substrates and the potential application of these strains in synbiotic formulations.

Ligilactobacillus agilis is a lactic acid bacterium isolated from traditional yogurt in Rajshahi. Here, we report the draft whole-genome sequence of Ligilactobacillus agilis SY88, with a genome size of 1,998,117 bp and GC content of 41.86%. This genome sequence expands the genomic resources for dairy-associated lactic acid bacterial species.

Mango productivity is threatened by dieback and fruit rot from Lasiodiplodia spp. (Botryosphaeriaceae fungal family). We report high-quality genomes of Lasiodiplodia theobromae, Lasiodiplodia euphorbiaceicola, and Lasiodiplodia brasiliensis from Côte d'Ivoire, enhancing genomic resources for comparative and pathogenicity studies of these fungal plant pathogens.

Cytobacillus sp. strain C11.1 was isolated from a microbial soil crust in the Salar de Aguilar, Atacama Desert, Chile. Its complete 4.99-Mb circular genome supports its classification as a Cytobacillus species and provides a genomic resource for studying adaptation to hypersaline, high-altitude environments.

Human coronavirus HKU1 is globally endemic but genomically understudied. We present six near-complete HKU1 genomes from samples collected in coastal Kenya (2024-2025) that fell into genotypes A (n = 3) and B (n = 3). The data expand the global HKU1 genomic database and will support molecular assay development and phylogeography studies.

Faecalibacterium prausnitzii was isolated from Holstein calf feces. Species identity was confirmed by partial 16S rRNA gene sequencing and whole-genome sequencing. The draft genome consisted of 48 contigs totaling 3.01 Mb, with an N50 of 138,331 bp and a GC content of 56.53%.

We report the draft genome sequences of four Ralstonia pseudosolanacearum strains obtained from the NARO Genebank, Japan. Illumina MiSeq i100 sequencing generated 2 × 300 bp paired-end reads. The draft assemblies ranged from 5.67 to 5.86 Mb, with GC contents of 66.9%-67.0%.

暂无摘要（点击查看详情）

We present a culture collection of 44 aquatic bacterial cultures isolated from samples collected from Lake Erie's Sandusky and Maumee Bays and Lake Victoria's Winam Gulf. Here, we detail isolation, cryopreservation, and genomic DNA preparation methods and sequences of full-length 16S rRNA genes.

There is little known about papillomavirus diversity in waterfowl. From cloacal swabs of one mallard and three northern pintails sampled in New Mexico (USA), we identified four papillomavirus genomes. These papillomaviruses share >92.7% genome-wide nucleotide pairwise identity with Anas platyrhynchos papillomavirus 3 (AplaPV3) identified from a mallard in Missouri (USA).

We employed a PacBio-Illumina hybrid sequencing approach to sequence the strain KP99 isolated from the sputum of a clinical patient. Classified as ST592, KP99 carries multiple resistance genes (including blaSHV-26, fosA5, and oqxA/B) and harbors a hypervirulent factor system, including the rmpA gene linked to CPS and siderophore-associated genes.

Artisanal cheeses are a source of bacteria with biotechnological potential. The genome size of Enterococcus lactis SP-50a was 2.71 Mb with 2,637 genes. Analysis identified genes for bacteriocin and peptidoglycan hydrolase synthesis, associated with antimicrobial activity. Additionally, the fabG gene was detected, indicating a possible polyhydroxyalkanoate production.

Bacillus safensis, a microorganism, is known for its environmental resilience and biotechnological relevance. Here, we report the draft genome sequence of strain SMT-MG31, isolated from mangrove sediment in Bangladesh, to support investigations into bioactive compound-producing bacteria from marine-associated ecosystems.

I report the complete genome sequence of Sphingobacterium kitahiroshimense strain Ss8-5, isolated from a sclerotium on a cabbage head affected by Sclerotinia rot. The complete genome consists of a single circular chromosome of 6.1 Mb with a GC content of 36.3%.

Here, we report the complete genome sequences of two Thermus thermophilus, one Thermus brockianus, and two Thermus brevis strains isolated from Kinosaki Hot Spring, Japan, generated using a hybrid assembly approach combining Oxford Nanopore long-read and Illumina short-read data.

We report complete genome sequences of two Streptococcus agalactiae isolates recovered from the urine of postmenopausal women with a history of recurrent urinary tract infection. These high-quality genomes will support ongoing efforts to understand S. agalactiae strain-level genetic variation and its potential role in urinary tract disease in this population.

We successfully acquired the complete mitochondrial genome information of Ramulus bifarius (S. C. Chen and Y. H. He, p. 476, Phasmatodea of China, 2008), which can be used for subsequent related molecular studies. The mitogenome of R. bifarius exhibits a circular duplex structure, with a total length of 16,915 bp and a high adenine and thymine bias of 76.7%. It contains 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a single control region.

We report the draft genome of Staphylococcus haemolyticus AIL_BAU_sh26 from a circulating banknote in Bangladesh. The 2.48 Mb genome (32.6% GC; 79 contigs; N50 89,821 bp) encodes 2,487 coding sequences, 34 tRNAs, and 3 rRNAs. Multiple antimicrobial resistance determinants, including mecA, and a plasmid replicon were identified, underscoring the public health relevance of environmental staphylococcal genomic surveillance.