Medical imaging systems such as CT, MRI, PET, and SPECT do not directly acquire images. Instead, they measure physical signals that encode anatomical or physiological information, and image reconstruction recovers the underlying image by solving an inverse problem. Although these imaging modalities are governed by different imaging physics, they share a common computational framework that naturally connects medical physics, linear algebra, probability, numerical optimization, and efficient computing. As medical imaging systems acquire increasingly large and higher-dimensional datasets, image reconstruction has become one of the primary computational bottlenecks in modern medical imaging. Advanced reconstruction methods, including analytical reconstruction, iterative optimization, and statistical model-based reconstruction, substantially improve image quality while reducing radiation dose or scan time, but at significantly increased computational cost. Efficient computing has therefore become essential for achieving clinically practical reconstruction times. This chapter presents a unified computational perspective on medical image acquisition and reconstruction across CT, MRI, PET,
Research in software engineering is essential for improving development practices, leading to reliable and secure software. Leveraging the principles of quantum physics, quantum computing has emerged as a new computational paradigm that offers significant advantages over classical computing. As quantum computing progresses rapidly, its potential applications across various fields are becoming apparent. In software engineering, many tasks involve complex computations where quantum computers can greatly speed up the development process, leading to faster and more efficient solutions. With the growing use of quantum-based applications in different fields, quantum software engineering (QSE) has emerged as a discipline focused on designing, developing, and optimizing quantum software for diverse applications. This paper aims to review the role of quantum computing in software engineering research and the latest developments in QSE. To our knowledge, this is the first comprehensive review on this topic. We begin by introducing quantum computing, exploring its fundamental concepts, and discussing its potential applications in software engineering. We also examine various QSE techniques th
Supporting and nurturing early career members is a vital component of succession planning for any profession or associations. Ensuring the thoughts and needs of newly-joined and early-career members of the Australasian College of Physical Sciences and Engineering in Medicine (ACPSEM) were represented and optimally met were key drivers in the creation of the New and Early career Special Interest Group (NESIG) in 2021. NESIG was incepted through the networking and collaboration of early career ACPSEM members who felt there was a need for such a group. The formation of this group was also motivated by data acquired from recent surveys highlighting motivation for initiatives that supported early career ACPSEM members. For example, the 2021 ACPSEM Radiation Oncology Medical Physics workforce survey showed overwhelming desire of early career members to be involved in student supervision, academic work and research. Similar themes have been identified in a Better Healthcare Technology survey on actions that would reduce barriers to ACPSEM members research and development work, and within other ACPSEM groups. Through consultation and guided by the findings of these surveys and discussions,
Contrastive Language-Image Pre-training (CLIP) has demonstrated outstanding performance in global image understanding and zero-shot transfer through large-scale text-image alignment. However, the core of medical image analysis often lies in the fine-grained understanding of specific anatomical structures or lesion regions. Therefore, precisely comprehending region-of-interest (RoI) information provided by medical professionals or perception models becomes crucial. To address this need, we propose MedP-CLIP, a region-aware medical vision-language model (VLM). MedP-CLIP innovatively integrates medical prior knowledge and designs a feature-level region prompt integration mechanism, enabling it to flexibly respond to various prompt forms (e.g., points, bounding boxes, masks) while maintaining global contextual awareness when focusing on local regions. We pre-train the model on a meticulously constructed large-scale dataset (containing over 6.4 million medical images and 97.3 million region-level annotations), equipping it with cross-disease and cross-modality fine-grained spatial semantic understanding capabilities. Experiments demonstrate that MedP-CLIP significantly outperforms basel
Access to diverse, well-annotated medical images with interactive learning tools is fundamental for training practitioners in medicine and related fields to improve their diagnostic skills and understanding of anatomical structures. While medical atlases are valuable, they are often impractical due to their size and lack of interactivity, whereas online image search may provide mislabeled or incomplete material. To address this, we propose MIRAGE, a multimodal medical text and image retrieval and generation system that allows users to find and generate clinically relevant images from trustworthy sources by mapping both text and images to a shared latent space, enabling semantically meaningful queries. The system is based on a fine-tuned medical version of CLIP (MedICaT-ROCO), trained with the ROCO dataset, obtained from PubMed Central. MIRAGE allows users to give prompts to retrieve images, generate synthetic ones through a medical diffusion model (Prompt2MedImage) and receive enriched descriptions from a large language model (Dolly-v2-3b). It also supports a dual search option, enabling the visual comparison of different medical conditions. A key advantage of the system is that it
The consideration of diversity, equity and inclusivity (DEI) is an important part of promoting a robust and respectful workforce, and is critical to the continued success of organisations, including healthcare providers, academic institutions and professional societies. Many professional bodies representing medical physicists have made commitments to DEI principles in the form of mission statements, policies, steering groups, frameworks and workforce surveys. In the Australian and New Zealand medical physics community, DEI work has included reflecting on the impact of stereotypes, surveys on workforce experiences, and capturing workforce diversity metrics (including gender, nationality, age and professional background). These projects have been conducted with the support of the Australasian College of Physical Sciences and Engineering in Medicine (ACPSEM) and have contributed to the enhancement of DEI in the ACPSEM workforce. Most of this work has been focused on gender diversity, reflecting increasing involvement in the Australian and New Zealand workforce: women accounted for 41\% of medical physics trainees and 32\% of registered medical physicists in a 2020 survey. In 2021, the
Realisation of significant advances in capabilities of sensors, computing, timing, and communication enabled by quantum technologies is dependent on engineering highly complex systems that integrate quantum devices into existing classical infrastructure. A systems engineering approach is considered to address the growing need for quantum-secure telecommunications that overcome the threat to encryption caused by maturing quantum computation. This work explores a range of existing and future quantum communication networks, specifically quantum key distribution network proposals, to model and demonstrate the evolution of quantum key distribution network architectures. Leveraging Orthogonal Variability Modelling and Systems Modelling Language as candidate modelling languages, the study creates traceable artefacts to promote modular architectures that are reusable for future studies. We propose a variability-driven framework for managing fast-evolving network architectures with respect to increasing stakeholder expectations. The result contributes to the systematic development of viable quantum key distribution networks and supports the investigation of similar integration challenges re
Objectives: Grid-based technologies are emerging as potential solutions for managing and collaborating distributed resources in the biomedical domain. Few examples exist, however, of successful implementations of Grid-enabled medical systems and even fewer have been deployed for evaluation in practice. The objective of this paper is to evaluate the use in clinical practice of a Grid-based imaging prototype and to establish directions for engineering future medical Grid developments and their subsequent deployment. Method: The MammoGrid project has deployed a prototype system for clinicians using the Grid as its information infrastructure. To assist in the specification of the system requirements (and for the first time in healthgrid applications), use-case modelling has been carried out in close collaboration with clinicians and radiologists who had no prior experience of this modelling technique. A critical qualitative and, where possible, quantitative analysis of the MammoGrid prototype is presented leading to a set of recommendations from the delivery of the first deployed Grid-based medical imaging application. Results: We report critically on the application of software engine
In the era when the market segment of Internet of Things (IoT) tops the chart in various business reports, it is apparently envisioned that the field of medicine expects to gain a large benefit from the explosion of wearables and internet-connected sensors that surround us to acquire and communicate unprecedented data on symptoms, medication, food intake, and daily-life activities impacting one's health and wellness. However, IoT-driven healthcare would have to overcome many barriers, such as: 1) There is an increasing demand for data storage on cloud servers where the analysis of the medical big data becomes increasingly complex, 2) The data, when communicated, are vulnerable to security and privacy issues, 3) The communication of the continuously collected data is not only costly but also energy hungry, 4) Operating and maintaining the sensors directly from the cloud servers are non-trial tasks. This book chapter defined Fog Computing in the context of medical IoT. Conceptually, Fog Computing is a service-oriented intermediate layer in IoT, providing the interfaces between the sensors and cloud servers for facilitating connectivity, data transfer, and queryable local database. Th
In this study, we explore how the combination of synthetic biology, neuroscience modeling, and neuromorphic electronic systems offers a new approach to creating an artificial system that mimics the natural sense of smell. We argue that a co-design approach offers significant advantages in replicating the complex dynamics of odor sensing and processing. We propose a hybrid system of synthetic sensory neurons that provides three key features: (a) receptor-gated ion channels, (b) interface between synthetic biology and semiconductors and (c) event-based encoding and computing based on spiking networks. Our approach is validated using simulation-based modeling of the complete sensing and processing pipeline. This research seeks to develop a platform for ultra-sensitive, specific, and energy-efficient odor detection, with potential implications for environmental monitoring, medical diagnostics, and security.
Medical imaging is an essential tool for diagnosing and treating diseases. However, lacking medical images can lead to inaccurate diagnoses and ineffective treatments. Generative models offer a promising solution for addressing medical image shortage problems due to their ability to generate new data from existing datasets and detect anomalies in this data. Data augmentation with position augmentation methods like scaling, cropping, flipping, padding, rotation, and translation could lead to more overfitting in domains with little data, such as medical image data. This paper proposes the GAN-GA, a generative model optimized by embedding a genetic algorithm. The proposed model enhances image fidelity and diversity while preserving distinctive features. The proposed medical image synthesis approach improves the quality and fidelity of medical images, an essential aspect of image interpretation. To evaluate synthesized images: Frechet Inception Distance (FID) is used. The proposed GAN-GA model is tested by generating Acute lymphoblastic leukemia (ALL) medical images, an image dataset, and is the first time to be used in generative models. Our results were compared to those of InfoGAN a
Today's distributed and pervasive computing addresses large-scale cyber-physical ecosystems, characterised by dense and large networks of devices capable of computation, communication and interaction with the environment and people. While most research focusses on treating these systems as "composites" (i.e., heterogeneous functional complexes), recent developments in fields such as self-organising systems and swarm robotics have opened up a complementary perspective: treating systems as "collectives" (i.e., uniform, collaborative, and self-organising groups of entities). This article explores the motivations, state of the art, and implications of this "collective computing paradigm" in software engineering, discusses its peculiar challenges, and outlines a path for future research, touching on aspects such as macroprogramming, collective intelligence, self-adaptive middleware, learning, synthesis, and experimentation of collective behaviour.
Medical image segmentation is critical for clinical diagnosis, treatment planning, and monitoring, yet segmentation models often struggle with uncertainties stemming from occlusions, ambiguous boundaries, and variations in imaging devices. Traditional test-time augmentation (TTA) techniques typically rely on predefined geometric and photometric transformations, limiting their adaptability and effectiveness in complex medical scenarios. In this study, we introduced Test-Time Generative Augmentation (TTGA), a novel augmentation strategy specifically tailored for medical image segmentation at inference time. Different from conventional augmentation strategies that suffer from excessive randomness or limited flexibility, TTGA leverages a domain-fine-tuned generative model to produce contextually relevant and diverse augmentations tailored to the characteristics of each test image. Built upon diffusion model inversion, a masked null-text inversion method is proposed to enable region-specific augmentations during sampling. Furthermore, a dual denoising pathway is designed to balance precise identity preservation with controlled variability. We demonstrate the efficacy of our TTGA through
Determining whether two sets of images belong to the same or different distributions or domains is a crucial task in modern medical image analysis and deep learning; for example, to evaluate the output quality of image generative models. Currently, metrics used for this task either rely on the (potentially biased) choice of some downstream task, such as segmentation, or adopt task-independent perceptual metrics (e.g., Fréchet Inception Distance/FID) from natural imaging, which we show insufficiently capture anatomical features. To this end, we introduce a new perceptual metric tailored for medical images, FRD (Fréchet Radiomic Distance), which utilizes standardized, clinically meaningful, and interpretable image features. We show that FRD is superior to other image distribution metrics for a range of medical imaging applications, including out-of-domain (OOD) detection, the evaluation of image-to-image translation (by correlating more with downstream task performance as well as anatomical consistency and realism), and the evaluation of unconditional image generation. Moreover, FRD offers additional benefits such as stability and computational efficiency at low sample sizes, sensiti
Training segmentation models for medical images continues to be challenging due to the limited availability of data annotations. Segment Anything Model (SAM) is a foundation model that is intended to segment user-defined objects of interest in an interactive manner. While the performance on natural images is impressive, medical image domains pose their own set of challenges. Here, we perform an extensive evaluation of SAM's ability to segment medical images on a collection of 19 medical imaging datasets from various modalities and anatomies. We report the following findings: (1) SAM's performance based on single prompts highly varies depending on the dataset and the task, from IoU=0.1135 for spine MRI to IoU=0.8650 for hip X-ray. (2) Segmentation performance appears to be better for well-circumscribed objects with prompts with less ambiguity and poorer in various other scenarios such as the segmentation of brain tumors. (3) SAM performs notably better with box prompts than with point prompts. (4) SAM outperforms similar methods RITM, SimpleClick, and FocalClick in almost all single-point prompt settings. (5) When multiple-point prompts are provided iteratively, SAM's performance ge
A paradigm shift is underway in Software Engineering, with AI systems such as LLMs playing an increasingly important role in boosting software development productivity. This trend is anticipated to persist. In the next years, we expect a growing symbiotic partnership between human software developers and AI. The Software Engineering research community cannot afford to overlook this trend; we must address the key research challenges posed by the integration of AI into the software development process. In this paper, we present our vision of the future of software development in an AI-driven world and explore the key challenges that our research community should address to realize this vision.
Digital Engineering, the digital transformation of engineering to leverage digital technologies, is coming globally. This paper explores digital systems engineering, which aims at developing theory, methods, models, and tools to support the emerging digital engineering. A critical task is to digitalize engineering artifacts, thus enabling information sharing across platform, across life cycle, and across domains. We identify significant challenges and enabling digital technologies; analyze the transition from traditional engineering to digital engineering; define core concepts, including "digitalization", "unique identification", "digitalized artifacts", "digital augmentation", and others; present a big picture of digital systems engineering in four levels: vision, strategy, action, and foundation; briefly discuss each of main areas of research issues. Digitalization enables fast infusing and leveraging novel digital technologies; unique identification enables information traceability and accountability in engineering lifecycle; provenance enables tracing dependency relations among engineering artifacts; supporting model reproducibility and replicability; helping with trustworthine
The fields of computing and biology have begun to cross paths in new ways. In this paper a review of the current research in biological computing is presented. Fundamental concepts are introduced and these foundational elements are explored to discuss the possibilities of a new computing paradigm. We assume the reader to possess a basic knowledge of Biology and Computer Science
The ability of Generative AI (GAI) technology to automatically check, synthesize and modify software engineering artifacts promises to revolutionize all aspects of software engineering. Using GAI for software engineering tasks is consequently one of the most rapidly expanding fields of software engineering research, with over a hundred LLM-based code models having been published since 2021. However, the overwhelming majority of existing code models share a major weakness - they are exclusively trained on the syntactic facet of software, significantly lowering their trustworthiness in tasks dependent on software semantics. To address this problem, a new class of "Morescient" GAI is needed that is "aware" of (i.e., trained on) both the semantic and static facets of software. This, in turn, will require a new generation of software observation platforms capable of generating large quantities of execution observations in a structured and readily analyzable way. In this paper, we present a vision and roadmap for how such "Morescient" GAI models can be engineered, evolved and disseminated according to the principles of open science.
To harness the potential of advanced computing technologies, efficient (real time) analysis of large amounts of data is as essential as are front-line simulations. In order to optimise this process, experts need to be supported by appropriate tools that allow to interactively guide both the computation and data exploration of the underlying simulation code. The main challenge is to seamlessly feed the user requirements back into the simulation. State-of-the-art attempts to achieve this, have resulted in the insertion of so-called check- and break-points at fixed places in the code. Depending on the size of the problem, this can still compromise the benefits of such an attempt, thus, preventing the experience of real interactive computing. To leverage the concept for a broader scope of applications, it is essential that a user receives an immediate response from the simulation to his or her changes. Our generic integration framework, targeted to the needs of the computational engineering domain, supports distributed computations as well as on-the-fly visualisation in order to reduce latency and enable a high degree of interactivity with only minor code modifications. Namely, the reg