Background/Introduction: In this paper, the neural network class of Self-Organising Maps (SOMs) is investigated in terms of its theoretical and applied validity for cognitive modelling, particularly of neurodevelopmental disorders. Methods: A modified SOM network type, with increased biological plausibility, incorporating a type of cortical columnar oscillation in the form of an oscillating Topological Neighbourhood (TN), is introduced and applied alongside the standard SOM. Aspects of two neurodevelopmental disorders, autism and schizophrenia, are modelled using SOM networks, based on existing neurocomputational theories. Both standard and oscillating-TN SOM training is employed with targeted modifications in the TN width function. Computer simulations are conducted using revised versions of a previously introduced model (IPSOM) based on a new modelling hypothesis. Results/Conclusions: The results demonstrate that there is strong similarity between standard and oscillating-TN SOM modelling in terms of map formation behaviour, output and structure, while the oscillating version offers a more realistic computational analogue of brain function. Neuroscientific and computational argum
We compare the network of aggregated journal-journal citation relations provided by the Journal Citation Reports (JCR) 2012 of the Science and Social Science Citation Indexes (SCI and SSCI) with similar data based on Scopus 2012. First, global maps were developed for the two sets separately; sets of documents can then be compared using overlays to both maps. Using fuzzy-string matching and ISSN numbers, we were able to match 10,524 journal names between the two sets; that is, 96.4% of the 10,936 journals contained in JCR or 51.2% of the 20,554 journals covered by Scopus. Network analysis was then pursued on the set of journals shared between the two databases and the two sets of unique journals. Citations among the shared journals are more comprehensively covered in JCR than Scopus, so the network in JCR is denser and more connected than in Scopus. The ranking of shared journals in terms of indegree (that is, numbers of citing journals) or total citations is similar in both databases overall (Spearman's \r{ho} > 0.97), but some individual journals rank very differently. Journals that are unique to Scopus seem to be less important--they are citing shared journals rather than bein
Rankings of scholarly journals based on citation data are often met with skepticism by the scientific community. Part of the skepticism is due to disparity between the common perception of journals' prestige and their ranking based on citation counts. A more serious concern is the inappropriate use of journal rankings to evaluate the scientific influence of authors. This paper focuses on analysis of the table of cross-citations among a selection of Statistics journals. Data are collected from the Web of Science database published by Thomson Reuters. Our results suggest that modelling the exchange of citations between journals is useful to highlight the most prestigious journals, but also that journal citation data are characterized by considerable heterogeneity, which needs to be properly summarized. Inferential conclusions require care in order to avoid potential over-interpretation of insignificant differences between journal ratings. Comparison with published ratings of institutions from the UK's Research Assessment Exercise shows strong correlation at aggregate level between assessed research quality and journal citation `export scores' within the discipline of Statistics.
This study examines the social media uptake of scientific journals on two different platforms - X and WeChat - by comparing the adoption of X among journals indexed in the Science Citation Index-Expanded (SCIE) with the adoption of WeChat among journals indexed in the Chinese Science Citation Database (CSCD). The findings reveal substantial differences in platform adoption and user engagement, shaped by local contexts. While only 22.7% of SCIE journals maintain an X account, 84.4% of CSCD journals have a WeChat official account. Journals in Life Sciences & Biomedicine lead in uptake on both platforms, whereas those in Technology and Physical Sciences show high WeChat uptake but comparatively lower presence on X. User engagement on both platforms is dominated by low-effort interactions rather than more conversational behaviors. Correlation analyses indicate weak-to-moderate relationships between bibliometric indicators and social media metrics, confirming that online engagement reflects a distinct dimension of journal impact, whether on an international or a local platform. These findings underscore the need for broader social media metric frameworks that incorporate locally dom
This study aims to present a scientometric analysis of the journal titled Cognition for a period of 20 years from 1999 to 2018. The present study was conducted with an aim to provide a summary of research activity in current journal and characterize its most aspects. The research coverage includes the year wise distribution of articles, authors, institutions, countries and citation analysis of the journal. The analysis showed that 2870 papers were published in journal of Cognition from 1999 to 2018. The study identified top 20 prolific authors, institutions and countries of the journal. Researchers from USA have been made the most percentage of contributions.
An exploratory, descriptive analysis is presented of the national orientation of scientific, scholarly journals as reflected in the affiliations of publishing or citing authors. It calculates for journals covered in Scopus an Index of National Orientation (INO), and analyses the distribution of INO values across disciplines and countries, and the correlation between INO values and journal impact factors. The study did not find solid evidence that journal impact factors are good measures of journal internationality in terms of the geographical distribution of publishing or citing authors, as the relationship between a journal's national orientation and its citation impact is found to be inverse U-shaped. In addition, journals publishing in English are not necessarily internationally oriented in terms of the affiliations of publishing or citing authors; in social sciences and humanities also USA has their nationally oriented literatures. The paper examines the extent to which nationally oriented journals entering Scopus in earlier years, have become in recent years more international. It is found that in the study set about 40 per cent of such journals does reveal traces of internati
The journal structure in the China Scientific and Technical Papers and Citations Database (CSTPCD) is analysed from three perspectives: the database level, the specialty level and the institutional level (i.e., university journals versus journals issued by the Chinese Academy of Sciences). The results are compared with those for (Chinese) journals included in the Science Citation Index. The frequency of journal-journal citation relations in the CSTPCD is an order of magnitude lower than in the SCI. Chinese journals, especially high-quality journals, prefer to cite international journals rather than domestic ones. However, Chinese journals do not get an equivalent reception from their international counterparts. The international visibility of Chinese journals is low, but varies among fields of science. Journals of the Chinese Academy of Sciences (CAS) have a better reception in the international scientific community than university journals.
Neurodevelopmental disorders (NDDs) have arisen as one of the most prevailing chronic diseases within the US. Often associated with severe adverse impacts on the formation of vital central and peripheral nervous systems during the neurodevelopmental process, NDDs are comprised of a broad spectrum of disorders, such as autism spectrum disorder, attention deficit hyperactivity disorder, and epilepsy, characterized by progressive and pervasive detriments to cognitive, speech, memory, motor, and other neurological functions in patients. However, the heterogeneous nature of NDDs poses a significant roadblock to identifying the exact pathogenesis, impeding accurate diagnosis and the development of targeted treatment planning. A computational NDDs model holds immense potential in enhancing our understanding of the multifaceted factors involved and could assist in identifying the root causes to expedite treatment development. To tackle this challenge, we introduce optimal neurotrophin concentration to the driving force and degradation of neurotrophin to the synaptogenesis process of a 2D phase field neuron growth model using isogeometric analysis to simulate neurite retraction and atrophy.
Overlay journals are characterised by their articles being published on open access repositories, often already starting in their initial preprint form as a prerequisite for submission to the journal prior to initiating the peer-review process. In this study we aimed to identify currently active overlay journals and examine their characteristics. We utilised an explorative web search and contacted key service providers for additional information. The final sample consisted of 34 overlay journals. While the results show that new overlay journals have been actively established within recent years, the current presence of overlay journals remains diminutive compared to the overall number of open access journals. Most overlay journals publish articles in natural sciences, mathematics or computer sciences, and are commonly published by groups of academics rather than formal organisations. They may also rank highly within the traditional journal citation metrics. None of the investigated journals required fees from authors, which is likely related to the cost-effective aspects of the overlay publishing model. Both the growth in adoption of open access preprint repositories and researcher
Using the Scopus dataset (1996-2007) a grand matrix of aggregated journal-journal citations was constructed. This matrix can be compared in terms of the network structures with the matrix contained in the Journal Citation Reports (JCR) of the Institute of Scientific Information (ISI). Since the Scopus database contains a larger number of journals and covers also the humanities, one would expect richer maps. However, the matrix is in this case sparser than in the case of the ISI data. This is due to (i) the larger number of journals covered by Scopus and (ii) the historical record of citations older than ten years contained in the ISI database. When the data is highly structured, as in the case of large journals, the maps are comparable, although one may have to vary a threshold (because of the differences in densities). In the case of interdisciplinary journals and journals in the social sciences and humanities, the new database does not add a lot to what is possible with the ISI databases.
Using three years of the Journal Citation Reports (2011, 2012, and 2013), indicators of transitions in 2012 (between 2011 and 2013) are studied using methodologies based on entropy statistics. Changes can be indicated at the level of journals using the margin totals of entropy production along the row or column vectors, but also at the level of links among journals by importing the transition matrices into network analysis and visualization programs (and using community-finding algorithms). Seventy-four journals are flagged in terms of discontinuous changes in their citations; but 3,114 journals are involved in "hot" links. Most of these links are embedded in a main component; 78 clusters (containing 172 journals) are flagged as potential "hot spots" emerging at the network level. An additional finding is that PLoS ONE introduced a new communication dynamics into the database. The limitations of the methodology are elaborated using an example. The results of the study indicate where developments in the citation dynamics can be considered as significantly unexpected. This can be used as heuristic information; but what a "hot spot" in terms of the entropy statistics of aggregated cit
A number of journal classification systems have been developed in bibliometrics since the launch of the Citation Indices by the Institute of Scientific Information (ISI) in the 1960s. These systems are used to normalize citation counts with respect to field-specific citation patterns. The best known system is the so-called "Web-of-Science Subject Categories" (WCs). In other systems papers are classified by algorithmic solutions. Using the Journal Citation Reports 2014 of the Science Citation Index and the Social Science Citation Index (n of journals = 11,149), we examine options for developing a new system based on journal classifications into subject categories using aggregated journal-journal citation data. Combining routines in VOSviewer and Pajek, a tree-like classification is developed. At each level one can generate a map of science for all the journals subsumed under a category. Nine major fields are distinguished at the top level. Further decomposition of the social sciences is pursued for the sake of example with a focus on journals in information science (LIS) and science studies (STS). The new classification system improves on alternative options by avoiding the problem
Defining and measuring internationality as a function of influence diffusion of scientific journals is an open problem. There exists no metric to rank journals based on the extent or scale of internationality. Measuring internationality is qualitative, vague, open to interpretation and is limited by vested interests. With the tremendous increase in the number of journals in various fields and the unflinching desire of academics across the globe to publish in "international" journals, it has become an absolute necessity to evaluate, rank and categorize journals based on internationality. Authors, in the current work have defined internationality as a measure of influence that transcends across geographic boundaries. There are concerns raised by the authors about unethical practices reflected in the process of journal publication whereby scholarly influence of a select few are artificially boosted, primarily by resorting to editorial maneuvres. To counter the impact of such tactics, authors have come up with a new method that defines and measures internationality by eliminating such local effects when computing the influence of journals. A new metric, Non-Local Influence Quotient(NLI
Ageing of publications, percentage of self-citations, and impact vary from journal to journal within fields of science. The assumption that citation and publication practices are homogenous within specialties and fields of science is invalid. Furthermore, the delineation of fields and among specialties is fuzzy. Institutional units of analysis and persons may move between fields or span different specialties. The match between the citation index and institutional profiles varies among institutional units and nations. The respective matches may heavily affect the representation of the units. Non-ISI journals are increasingly cornered into "transdisciplinary" Mode-2 functions with the exception of specialist journals publishing in languages other than English. An "externally cited impact factor" can be calculated for these journals. The citation impact of non-ISI journals will be demonstrated using Science and Public Policy as the example.
The journal impact factor (JIF) is the average of the number of citations of the papers published in a journal, calculated according to a specific formula; it is extensively used for the evaluation of research and researchers. The method assumes that all papers in a journal have the same scientific merit, which is measured by the JIF of the publishing journal. This implies that the number of citations measures scientific merits but the JIF does not evaluate each individual paper by its own number of citations. Therefore, in the comparative evaluation of two papers, the use of the JIF implies a risk of failure, which occurs when a paper in the journal with the lower JIF is compared to another with fewer citations in the journal with the higher JIF. To quantify this risk of failure, this study calculates the failure probabilities, taking advantage of the lognormal distribution of citations. In two journals whose JIFs are ten-fold different, the failure probability is low. However, in most cases when two papers are compared, the JIFs of the journals are not so different. Then, the failure probability can be close to 0.5, which is equivalent to evaluating by coin flipping.
There is an overall perception of increased interdisciplinarity in science, but this is difficult to confirm quantitatively owing to the lack of adequate methods to evaluate subjective phenomena. This is no different from the difficulties in establishing quantitative relationships in human and social sciences. In this paper we quantified the interdisciplinarity of scientific journals and science fields by using an entropy measurement based on the diversity of the subject categories of journals citing a specific journal. The methodology consisted in building citation networks using the Journal Citation Reports database, in which the nodes were journals and edges were established based on citations among journals. The overall network for the 11-year period (1999-2009) studied was small-world and scale free with regard to the in-strength. Upon visualizing the network topology an overall structure of the various science fields could be inferred, especially their interconnections. We confirmed quantitatively that science fields are becoming increasingly interdisciplinary, with the degree of interdisplinarity (i.e. entropy) correlating strongly with the in-strength of journals and with t
Pediatric high grade gliomas are lethal evolutionary disorders with stalled developmental trajectories and disrupted differentiation hierarchies. We integrate transcriptional and algorithmic network complexity based perturbation analysis to elucidate gene expression patterns and molecular divergence between Diffuse Midline Gliomas and glioblastoma, revealing shared developmental programs steering cell fate decision making. Our complex systems approach supports the emerging paradigm that pediatric high grade gliomas are neurodevelopmental disorders with hybrid lineage identities and disrupted patterning. We identify dysregulated neurodevelopmental and morphogenetic signatures, alongside bioelectric and neurotransmitter signaling programs that alter synaptic organization, neuronal fate commitment, and phenotypic plasticity, regulating glioma phenotypic switching. Causal drivers and regulators of plasticity were predicted as both biomarkers and therapeutic targets, reinforcing the view that pediatric gliomas are disorders of cell fate decisions and collective cellular identity. Decoded plasticity signatures indicate a teleonomic bias toward neural progenitor or neuron like identities,
This paper introduces the Unique Citing Documents Journal Impact Factor(Uniq-JIF) as a supplement to the traditional Journal Impact Factor(JIF). The Uniq-JIF counts each citing document only once, aiming to reduce the effects of citation manipulations. Analysis of 2023 Journal Citation Reports data shows that for most journals, the Uniq-JIF is less than 20% lower than the JIF, though some journals show a drop of over 75%. The Uniq-JIF also highlights significant reductions for journals suppressed due to citation issues, indicating its effectiveness in identifying problematic journals. The Uniq-JIF offers a more nuanced view of a journal's influence and can help reveal journals needing further scrutiny.
Neurodevelopmental disorders (NDD), encompassing conditions like Intellectual Disability, Attention Deficit Hyperactivity Disorder, and Autism Spectrum Disorder, present challenges across various cognitive capacities. Attention deficits are often common in individuals with NDD due to the sensory system dysfunction that characterizes these disorders. Consequently, limited attention capability can affect the overall quality of life and the ability to transfer knowledge from one circumstance to another. The literature has increasingly recognized the potential benefits of virtual reality (VR) in supporting NDD learning and rehabilitation due to its interactive and engaging nature, which is critical for consistent practice. In previous studies, we explored the usage of a VR application called Wildcard to enhance attention skills in persons with NDD. The application has been redesigned in this study, exploiting eye-tracking technology to enable novel and more fine-grade interactions. A four-week experiment with 38 NDD participants was conducted to evaluate its usability and effectiveness in improving Visual Attention Skills. Results show the usability and effectiveness of Wildcard in enh
Deep reinforcement learning (DRL) algorithms have the potential to provide new insights into psychiatric disorders. Here we create a DRL model of schizophrenia: a complex psychotic disorder characterized by anhedonia, avoidance, temporal discounting, catatonia, and hallucinations. Schizophrenia's causes are not well understood: dopaminergic theories emphasize dopamine system dysfunction, while neurodevelopmental theories emphasize abnormal connectivity, including excitation/inhibition (E/I) imbalance in the brain. In this study, we suppressed positive (excitatory) connections within an artificial neural network to simulate E/I imbalance. Interestingly, this is insufficient to create behavioral changes; the network simply compensates for the imbalance. But in doing so it becomes more sensitive to noise. Injecting noise into the network then creates a range of schizophrenic-like behaviours. These findings point to an interesting potential pathology of schizophrenia: E/I imbalance leads to a compensatory response by the network to increase the excitability of neurons, which increases susceptibility to noise. This suggests that the combination of E/I imbalance and neural noise may be k