Background: Morbid obesity is associated with metabolic alterations and the onset of type 2 diabetes. Patients who undergo a malabsorptive bariatric surgery show an important improvement in several clinical variables and a modification in the gut microbiota balance. In this study, we aimed to identify bacteria related to changes in the body mass index of patients who underwent a bariatric surgery and their relationship with nutrients intake. Results: There were differences in bacterial diversity in the gut microbiota of patients that underwent a bariatric surgery. The Shannon and Simpson indexes decrease after the surgery (p < 0.001) and the beta diversity indexes (Bray-Curtis, Weighted and Unweighted UniFrac) showed differences when comparing pre- and post-surgery (p = 0.001). The abundance of a species in the genus Coprococcus correlated positively with the intake of magnesium and thiamin in post-surgery individuals (rho = 0.816, pFDR = 0.029 and rho = 0.812, pFDR = 0.029, respectively) and was related to BMI in both groups (p = 0.043 pre-surgery and p = 0.036 post-surgery). The abundances of several bacteria belonging to the order Clostridiales, as well as an enrichment of vi
Osteoarthritis (OA) is the most prevalent chronic joint disease worldwide, where knee OA takes more than 80% of commonly affected joints. Knee OA is not a curable disease yet, and it affects large columns of patients, making it costly to patients and healthcare systems. Etiology, diagnosis, and treatment of knee OA might be argued by variability in its clinical and physical manifestations. Although knee OA carries a list of well-known terminology aiming to standardize the nomenclature of the diagnosis, prognosis, treatment, and clinical outcomes of the chronic joint disease, in practice there is a wide range of terminology associated with knee OA across different data sources, including but not limited to biomedical literature, clinical notes, healthcare literacy, and health-related social media. Among these data sources, the scientific articles published in the biomedical literature usually make a principled pipeline to study disease. Rapid yet, accurate text mining on large-scale scientific literature may discover novel knowledge and terminology to better understand knee OA and to improve the quality of knee OA diagnosis, prevention, and treatment. The present works aim to utiliz
This paper presents multi- and interdisciplinary approaches for finding the appropriate AI technologies for research information. Professional research information management (RIM) is becoming increasingly important as an expressly data-driven tool for researchers. It is not only the basis of scientific knowledge processes, but also related to other data. A concept and a process model of the elementary phases from the start of the project to the ongoing operation of the AI methods in the RIM is presented, portraying the implementation of an AI project, meant to enable universities and research institutions to support their researchers in dealing with incorrect and incomplete research information, while it is being stored in their RIMs. Our aim is to show how research information harmonizes with the challenges of data literacy and data quality issues, related to AI, also wanting to underline that any project can be successful if the research institutions and various departments of universities, involved work together and appropriate support is offered to improve research information and data management.
By accurately measuring composition and energy spectrum of cosmic ray, the origin problem of so called "keen" region (energy > 1 PeV) can be solved. However, up to the present, the results of the spectrum in the knee region obtained by several previous experiments have shown obvious differences, so they cannot give effective evidence for judging the theoretical models on the origin of the knee. Recently, the Large High Altitude Air Shower Observatory (LHAASO) has reported several major breakthroughs and important results in astro-particle physics field. Relying on its advantages of wide-sky survey, high altitude location and large area detector arrays, the research content of LHAASO experiment mainly includes ultra high-energy gamma-ray astronomy, measurement of cosmic ray spectra in the knee region, searching for dark matter and new phenomena of particle physics at higher energy. The electron and Thermal Neutron detector (EN-Detector) is a new scintillator detector which applies thermal neutron detection technology to measure cosmic ray extensive air shower (EAS). This technology is an extension of LHAASO. The EN-Detector Array (ENDA) can highly efficiently measure thermal neut
This paper presents a scientometric analysis of research output from the University of Lagos, focusing on the two decades spanning 2004 to 2023. Using bibliometric data retrieved from the Web of Science, we examine trends in publication volume, collaboration patterns, citation impact, and the most prolific authors, departments, and research domains at the university. The study reveals a consistent increase in research productivity, with the highest publication output recorded in 2023. Health Sciences, Engineering, and Social Sciences are identified as dominant fields, reflecting the university's interdisciplinary research strengths. Collaborative efforts, both locally and internationally, show a positive correlation with higher citation impact, with the United States and the United Kingdom being the leading international collaborators. Notably, open-access publications account for a significant portion of the university's research output, enhancing visibility and citation rates. The findings offer valuable insights into the university's research performance over the past two decades, providing a foundation for strategic planning and policy formulation to foster research excellence
Knee osteoarthritis (OA) is one of the most widespread and burdensome health problems [1-4]. Total knee replacement (TKR) may be offered as treatment for end-stage knee OA. Nevertheless, TKR is an invasive procedure involving prosthesis implantation at the knee joint, and around 10% of patients are dissatisfied following TKR [5,6]. Dissatisfaction is often assessed through patient-reported outcome measures (PROMs) [7], which are usually completed by patients and assessed by health professionals to evaluate the condition of TKR patients. In clinical practice, predicting poor TKR outcomes in advance could help optimise patient selection and improve management strategies. Radiographic knee alignment is an important biomarker for predicting TKR outcomes and long-term joint health. Abnormalities such as femoral or tibial deformities can directly influence surgical planning, implant selection, and postoperative recovery [8,9]. Traditional alignment measurement is manual, time-consuming, and requires long-leg radiographs, which are not always undertaken in clinical practice. Instead, standard anteroposterior (AP) knee radiographs are often the main imaging modality. Automated methods for
A survival analysis model for predicting time-to-total knee replacement (TKR) was developed using features from medical images and clinical measurements. Supervised and self-supervised deep learning approaches were utilized to extract features from radiographs and magnetic resonance images. Extracted features were combined with clinical and image assessments for survival analysis using random survival forests. The proposed model demonstrated high discrimination power by combining deep learning features and clinical and image assessments using a fusion of multiple modalities. The model achieved an accuracy of 75.6% and a C-Index of 84.8% for predicting the time-to-TKR surgery. Accurate time-to-TKR predictions have the potential to help assist physicians to personalize treatment strategies and improve patient outcomes.
This scientometric study analyzes Avian Influenza research from 2014 to 2023 using bibliographic data from the Web of Science database. We examined publication trends, sources, authorship, collaborative networks, document types, and geographical distribution to gain insights into the global research landscape. Results reveal a steady increase in publications, with high contributions from Chinese and American institutions. Journals such as PLoS One and the Journal of Virology published the highest number of studies, indicating their influence in this field. The most prolific institutions include the Chinese Academy of Sciences and the University of Hong Kong, while the College of Veterinary Medicine at South China Agricultural University emerged as the most productive department. China and the USA lead in publication volume, though developed nations like the United Kingdom and Germany exhibit a higher rate of international collaboration. "Articles" are the most common document type, constituting 84.6% of the total, while "Reviews" account for 7.6%. This study provides a comprehensive view of global trends in Avian Influenza research, emphasizing the need for collaborative efforts ac
Demographic data collection is essential in education research, as demographic data allows researchers to better describe the participant population they study and to contextualize findings. However, current research practices for neurodiversity demographics often rely on prescriptive methods (e.g., requiring participants to report official diagnoses) rather than allowing participants to self-identify. This approach can: a) not allow participants to express their intersecting identities in ways that are authentic; and b) limit trustworthiness and reliability of the data and interpretation. In addition, inconsistent dissemination and representation of demographic data across studies hinder the accessibility and usability of this work. Through a literature review of neurodivergent student experiences with learning and performing STEM, we identified widespread discrepancies in how demographic information is collected and reported. This paper explores how neurodivergent identities can be more accurately and inclusively represented in education research. We present findings of a thematic analysis on the ways neurodivergent demographic data collection is done in the literature using data
Accurate reconstruction of implanted knee models is crucial in orthopedic surgery and biomedical engineering, enhancing preoperative planning, optimizing implant design, and improving surgical outcomes. Traditional methods rely on labor-intensive and error-prone manual segmentation. This study proposes a novel approach using machine learning (ML) algorithms and morphing techniques for precise 3D reconstruction of implanted knee models. The methodology begins with acquiring preoperative imaging data, such as fluoroscopy or X-ray images of the patient's knee joint. A convolutional neural network (CNN) is then trained to automatically segment the femur contour of the implanted components, significantly reducing manual effort and ensuring high accuracy. Following segmentation, a morphing algorithm generates a personalized 3D model of the implanted knee joint, using the segmented data and biomechanical principles. This algorithm considers implant position, size, and orientation to simulate the knee joint's shape. By integrating morphological data with implant-specific parameters, the reconstructed models accurately reflect the patient's implant anatomy and configuration. The approach's
This study forms the basis of a digital twin system of the knee joint, using advanced quantitative MRI (qMRI) and machine learning to advance precision health in osteoarthritis (OA) management and knee replacement (KR) prediction. We combined deep learning-based segmentation of knee joint structures with dimensionality reduction to create an embedded feature space of imaging biomarkers. Through cross-sectional cohort analysis and statistical modeling, we identified specific biomarkers, including variations in cartilage thickness and medial meniscus shape, that are significantly associated with OA incidence and KR outcomes. Integrating these findings into a comprehensive framework represents a considerable step toward personalized knee-joint digital twins, which could enhance therapeutic strategies and inform clinical decision-making in rheumatological care. This versatile and reliable infrastructure has the potential to be extended to broader clinical applications in precision health.
The Emory Knee Radiograph (MRKR) dataset is a large, demographically diverse collection of 503,261 knee radiographs from 83,011 patients, 40% of which are African American. This dataset provides imaging data in DICOM format along with detailed clinical information, including patient-reported pain scores, diagnostic codes, and procedural codes, which are not commonly available in similar datasets. The MRKR dataset also features imaging metadata such as image laterality, view type, and presence of hardware, enhancing its value for research and model development. MRKR addresses significant gaps in existing datasets by offering a more representative sample for studying osteoarthritis and related outcomes, particularly among minority populations, thereby providing a valuable resource for clinicians and researchers.
The purpose of this paper is to contribute towards the near-future privacy-preserving big data analytical healthcare platforms, capable of processing streamed or uploaded timeseries data or videos from patients. The experimental work includes a real-life knee rehabilitation video dataset capturing a set of exercises from simple and personalised to more general and challenging movements aimed for returning to sport. To convert video from mobile into privacy-preserving diagnostic timeseries data, we employed Google MediaPipe pose estimation. The developed proof-of-concept algorithms can augment knee exercise videos by overlaying the patient with stick figure elements while updating generated timeseries plot with knee angle estimation streamed as CSV file format. For patients and physiotherapists, video with side-to-side timeseries visually indicating potential issues such as excessive knee flexion or unstable knee movements or stick figure overlay errors is possible by setting a-priori knee-angle parameters. To address adherence to rehabilitation programme and quantify exercise sets and repetitions, our adaptive algorithm can correctly identify (91.67%-100%) of all exercises from sid
Background and aim: Image registration and alignment are the main limitations of augmented reality-based knee replacement surgery. This research aims to decrease the registration error, eliminate outcomes that are trapped in local minima to improve the alignment problems, handle the occlusion, and maximize the overlapping parts. Methodology: markerless image registration method was used for Augmented reality-based knee replacement surgery to guide and visualize the surgical operation. While weight least square algorithm was used to enhance stereo camera-based tracking by filling border occlusion in right to left direction and non-border occlusion from left to right direction. Results: This study has improved video precision to 0.57 mm~0.61 mm alignment error. Furthermore, with the use of bidirectional points, for example, forwards and backwards directional cloud point, the iteration on image registration was decreased. This has led to improve the processing time as well. The processing time of video frames was improved to 7.4~11.74 fps. Conclusions: It seems clear that this proposed system has focused on overcoming the misalignment difficulty caused by movement of patient and enhan
The production of knowledge has become increasingly a global endeavor. Yet, location related factors, such as local working environment and national policy designs, may continue to affect what kind of science is being pursued. Here we examine the geography of the production of creative science by country, through the lens of novelty and atypicality proposed in Uzzi et al. (2013). We quantify a country's representativeness in novel and atypical science, finding persistent differences in propensity to generate creative works, even among developed countries that are large producers in science. We further cluster countries based on how their tendency to publish novel science changes over time, identifying one group of emerging countries. Our analyses point out the recent emergence of China not only as a large producer in science but also as a leader that disproportionately produces more novel and atypical research. Discipline specific analysis indicates that China's over-production of atypical science is limited to a few disciplines, especially its most prolific ones like materials science and chemistry.
Concept erasure in text-to-image diffusion models is crucial for mitigating harmful content, yet existing methods often compromise generative quality. We introduce Semantic Surgery, a novel training-free, zero-shot framework for concept erasure that operates directly on text embeddings before the diffusion process. It dynamically estimates the presence of target concepts in a prompt and performs a calibrated vector subtraction to neutralize their influence at the source, enhancing both erasure completeness and locality. The framework includes a Co-Occurrence Encoding module for robust multi-concept erasure and a visual feedback loop to address latent concept persistence. As a training-free method, Semantic Surgery adapts dynamically to each prompt, ensuring precise interventions. Extensive experiments on object, explicit content, artistic style, and multi-celebrity erasure tasks show our method significantly outperforms state-of-the-art approaches. We achieve superior completeness and robustness while preserving locality and image quality (e.g., 93.58 H-score in object erasure, reducing explicit content to just 1 instance, and 8.09 H_a in style erasure with no quality degradation).
Purpose: Trochlear Dysplasia (TD) is a common malformation in adolescents, leading to anterior knee pain and instability. Surgical interventions such as trochleoplasty require precise planning to correct the trochlear groove. However, no standardized preoperative plan exists to guide surgeons in reshaping the femur. This study aims to generate patient-specific, pseudo-healthy MR images of the trochlear region that should theoretically align with the respective patient's patella, potentially supporting the pre-operative planning of trochleoplasty. Methods: We employ a Wavelet Diffusion Model (WDM) to generate personalized pseudo-healthy, anatomically plausible MR scans of the trochlear region. We train our model using knee MR scans of healthy subjects. During inference, we mask out pathological regions around the patella in scans of patients affected by TD, and replace them with their pseudo-healthy counterpart. An orthopedic surgeon measured the sulcus angle (SA), trochlear groove depth (TGD) and Déjour classification in MR scans before and after inpainting. The code is available at https://github.com/wehrlimi/Generate-Pseudo-Healthy-Knee-MRI . Results: The inpainting by our model
In most countries, basic research is supported by research councils that select, after peer review, the individuals or teams that are to receive funding. Unfortunately, the number of grants these research councils can allocate is not infinite and, in most cases, a minority of the researchers receive the majority of the funds. However, evidence as to whether this is an optimal way of distributing available funds is mixed. The purpose of this study is to measure the relation between the amount of funding provided to 12,720 researchers in Quebec over a fifteen year period (1998-2012) and their scientific output and impact from 2000 to 2013. Our results show that both in terms of the quantity of papers produced and of their scientific impact, the concentration of research funding in the hands of a so-called "elite" of researchers generally produces diminishing marginal returns. Also, we find that the most funded researchers do not stand out in terms of output and scientific impact.
There has been a transition from broad to more specific research questions in the practice of network meta-analysis (NMA). Such convergence is also taking place in the context of individual registrational trials, following the recent introduction of the estimand framework, which is impacting the design, data collection strategy, analysis and interpretation of clinical trials. The language of estimands has much to offer to NMA, particularly given the "narrow" perspective of treatments and target populations taken in health technology assessment.
By classical results of Rochlin, Thom, Wallace and Lickorish, it is well-known that any two 3-manifolds (with diffeomorphic boundaries) are related one to the other by surgery operations. Yet, by restricting the type of the surgeries, one can define several families of non-trivial equivalence relations on the sets of (diffeomorphism classes of) 3-manifolds. In this expository paper, which is based on lectures given at the school ``Winter Braids XI'' (Dijon, December 2021), we explain how certain filtrations of mapping class groups of surfaces enter into the definitions and the mutual comparison of these surgery equivalence relations. We also survey the ways in which concrete invariants of 3-manifolds (such as finite-type invariants) can be used to characterize such relations.